Inferring dynamic gene regulatory networks in cardiac differentiation through the integration of multi-dimensional data. - Wuming Gong; Naoko Koyano-Nakagawa; Tongbin Li; Daniel J. Garry (BMC Bioinform., 2015)

DrImpute: imputing dropout events in single cell RNA sequencing data. - Wuming Gong; Il-Youp Kwak; Pruthvi Pota; Naoko Koyano-Nakagawa; Daniel J. Garry (BMC Bioinform., 2018)

Single cell lineage reconstruction using distance-based algorithms and the R package, DCLEAR. - Wuming Gong; Hyunwoo J. Kim; Daniel J. Garry; Il-Youp Kwak (BMC Bioinform., 2022)

Proformer: a hybrid macaron transformer model predicts expression values from promoter sequences. - Il-Youp Kwak; Byeong-Chan Kim; Juhyun Lee; Taein Kang; Daniel J. Garry; Jianyi Zhang; Wuming Gong (BMC Bioinform., 2024)