AS/RS amd warehouse modeling. - Daniel J. Muller (WSC, 1989)

A simulation-based work order release mechanism for a flexible manufacturing system. - Daniel J. Muller; John K. Jackman; Charles Fitzwater (WSC, 1990)

Simulation: "What to Do with the Model Afterward". - Daniel J. Muller (WSC, 1996)

Transportation and material handling: complexities of AGV modelling in newspaper roll delivery system. - Daniel J. Muller; Sarah M. Cardinal; Juergen Baumbach (WSC, 2002)

A Structure-Based Analysis of Single Molecule Force Spectroscopy (SMFS) Data for Bacteriorhodopsin and Four Mutants. - Annalisa Marsico; K. Tanuj Sapra; Daniel J. Muller; Michael Schroeder 001; Dirk Labudde (CompLife, 2006)

Analysis assistant for single-molecule force spectroscopy data on membrane proteins - MPTV. - Frank Mueller 003; Daniel J. Muller; Dirk Labudde (Bioinform., 2006)

A novel pattern recognition algorithm to classify membrane protein unfolding pathways with high-throughput single-molecule force spectroscopy. - Annalisa Marsico; Dirk Labudde; K. Tanuj Sapra; Daniel J. Muller; Michael Schroeder 001 (Bioinform., 2007)

Automod®: Performance, scalability and accuracy. - Daniel J. Muller (WSC, 2017)