Resolving single-cell heterogeneity from hundreds of thousands of cells through sequential hybrid clustering and NMF. - Meenakshi Venkatasubramanian; Kashish Chetal; Daniel J. Schnell; Gowtham Atluri; Nathan Salomonis (Bioinform., 2020)

CellDrift: inferring perturbation responses in temporally sampled single-cell data. - Kang Jin; Daniel J. Schnell; Guangyuan Li; Nathan Salomonis; V. B. Surya Prasath; Rhonda Szczesniak; Bruce J. Aronow (Briefings Bioinform., 2022)