Grid-based management of biomedical data using an XML-based distributed data management system. - Shannon Hastings; Stephen Langella; Scott Oster; Tahsin M. Kurç; Tony Pan; Ümit V. Çatalyürek; Daniel Janies; Joel H. Saltz (SAC, 2005)

Application of Information Technology: An XML-based System for Synthesis of Data from Disparate Databases. - Tahsin M. Kurç; Daniel Janies; Andrew D. Johnson; Stephen Langella; Scott Oster; Shannon Hastings; Farhat Habib; Terry Camerlengo; David Ervin; Ümit V. Çatalyürek; Joel H. Saltz (J. Am. Medical Informatics Assoc., 2006)

Towards Phylogenomic Reconstruction. - Le Vinh; Andrés Varón; Daniel Janies; Ward C. Wheeler (BIOCOMP, 2007)

Large scale genotype-phenotype correlation analysis based on phylogenetic trees. - Farhat Habib; Andrew D. Johnson; Ralf Bundschuh; Daniel Janies (Bioinform., 2007)

Large-Scale Phylogenetic Analysis for the Study of Zoonosis and Assessment of Influenza Surveillance. - Daniel A. Janies; Pablo A. Goloboff; Diego Pol (Scalable Comput. Pract. Exp., 2007)

Large-scale phylogenetic analysis on current HPC architectures. - Michael Ott 001; Jaroslaw Zola; Srinivas Aluru; Andrew D. Johnson; Daniel Janies; Alexandros Stamatakis (Sci. Program., 2008)

Reassortment Networks for Investigating the Evolution of Segmented Viruses. - Shahid H. Bokhari; Daniel Janies (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

Reassortment Networks and the Evolution of Pandemic H1N1 Swine-Origin Influenza. - Shahid H. Bokhari; Laura W. Pomeroy; Daniel Janies (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Envisioning a future for a spatial-health CyberGIS marketplace. - Daniel W. Goldberg; Myles G. Cockburn; Tracy Anne Hammond; Geoffrey M. Jacquez; Daniel Janies; Craig A. Knoblock; Werner Kuhn; Edward Pultar; Martin Raubal (HealthGIS, 2013)

Synergistic Sharing of Data and Tools to Enable Team Science. - Ross Mounce; Daniel Janies (Computation for Humanity, 2014)

Syndromic Surveillance of Infectious Diseases meets Molecular Epidemiology in a Workflow and Phylogeographic Application. - Daniel Janies; Zachary L. Witter; Christian Gibson; Thomas Kraft; Izzet F. Senturk; Ümit V. Çatalyürek (MedInfo, 2015)

Cladograms with Path to Event (ClaPTE): A novel algorithm to detect associations between genotypes or phenotypes using phylogenies. - Samuel K. Handelman; Jacob M. Aaronson; Michal Seweryn; Igor Voronkin; Jesse J. Kwiek; Wolfgang Sadee; Joseph S. Verducci; Daniel A. Janies (Comput. Biol. Medicine, 2015)

Visual analytics on the spread of pathogens. - Julien Herrmann; Zachary L. Witter; Nakul Patel; Jonathan Kho; Daniel A. Janies; Ümit V. Çatalyürek (BCB, 2016)

EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms. - Daniel A. Janies; Zachary L. Witter; Gregorio V. Linchangco; David W. Foltz; Allison K. Miller; Alexander M. Kerr; Jeremy J. Jay; Robert W. Reid; Gregory A. Wray (BMC Bioinform., 2016)

StrainHub: a phylogenetic tool to construct pathogen transmission networks. - Adriano de Bernardi Schneider; Colby T. Ford; Reilly Hostager; John Williams; Michael Cioce; Ümit V. Çatalyürek; Joel O. Wertheim; Daniel Janies (Bioinform., 2020)

A parallelized strategy for epistasis analysis based on Empirical Bayesian Elastic Net models. - Jia Wen; Colby T. Ford; Daniel Janies; Xinghua Shi (Bioinform., 2020)

Ensemble machine learning modeling for the prediction of artemisinin resistance in malaria. - Colby T. Ford; Daniel Janies (F1000Research, 2020)

Detecting Misinformation in Multimedia Content through Cross-Modal Entity Consistency: A Dual Learning Approach. - Zhe Fu; Kanlun Wang; Wangjiaxuan Xin; Lina Zhou; Shi Chen; Yaorong Ge; Daniel Janies; Dongsong Zhang (PACIS, 2024)

Predicting Antibody and ACE2 Affinity for SARS-CoV-2 BA.2.86 and JN.1 with In Silico Protein Modeling and Docking. - Shirish Yasa; Sayal Guirales-Medrano; Denis Jacob Machado; Colby T. Ford; Daniel Janies (IEEE DataPort, 2024)