SAVoR: a server for sequencing annotation and visualization of RNA structures. - Fan Li 002; Paul Ryvkin; Daniel M. Childress; Otto Valladares; Brian D. Gregory; Li-San Wang (Nucleic Acids Res., 2012)

DRAW+SneakPeek: Analysis workflow and quality metric management for DNA-seq experiments. - Chiao-Feng Lin; Otto Valladares; Daniel M. Childress; Egor Klevak; Evan T. Geller; Yih-Chii Hwang; Ellen A. Tsai; Gerard D. Schellenberg; Li-San Wang (Bioinform., 2013)

A comprehensive database of high-throughput sequencing-based RNA secondary structure probing data (Structure Surfer). - Nathan D. Berkowitz; Ian M. Silverman; Daniel M. Childress; Hilal Kazan; Li-San Wang; Brian D. Gregory (BMC Bioinform., 2016)