The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets. - Matthew B. Stocks; Simon Moxon; Daniel Mapleson; Hugh C. Woolfenden; Irina Mohorianu; Leighton Folkes; Frank Schwach; Tamas Dalmay; Vincent Moulton (Bioinform., 2012)

RAMPART: a workflow management system for de novo genome assembly. - Daniel Mapleson; Nizar Drou; David Swarbreck (Bioinform., 2015)

KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies. - Daniel Mapleson; Gonzalo Garcia Accinelli; George Kettleborough; Jonathan Wright; Bernardo J. Clavijo (Bioinform., 2017)

SPECTRE: a suite of phylogenetic tools for reticulate evolution. - Sarah Bastkowski; Daniel Mapleson; Andreas Spillner 001; Taoyang Wu; Monika Balvociute; Vincent Moulton (Bioinform., 2018)