Bio-mimetic Evolutionary Reverse Engineering of Genetic Regulatory Networks. - Daniel Marbach; Claudio Mattiussi; Dario Floreano (EvoBIO, 2007)

The Age of Analog Networks. - Claudio Mattiussi; Daniel Marbach; Peter Dürr; Dario Floreano (AI Mag., 2008)

Generating Realistic In Silico Gene Networks for Performance Assessment of Reverse Engineering Methods. - Daniel Marbach; Thomas Schaffter; Claudio Mattiussi; Dario Floreano (J. Comput. Biol., 2009)

Evolutionary reverse engineering of gene networks. - Daniel Marbach (2009)

Information-Theoretic Inference of Gene Networks Using Backward Elimination. - Patrick Meyer; Daniel Marbach; Sushmita Roy; Manolis Kellis (BIOCOMP, 2010)

GeneNetWeaver: in silico benchmark generation and performance profiling of network inference methods. - Thomas Schaffter; Daniel Marbach; Dario Floreano (Bioinform., 2011)

Beyond graphs: A new synthesis. - Claudio Mattiussi; Peter Dürr; Daniel Marbach; Dario Floreano (J. Comput. Sci., 2011)

Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics. - David Lamparter 002; Daniel Marbach; Rico Rueedi; Zoltán Kutalik; Sven Bergmann (PLoS Comput. Biol., 2016)

Genome-Wide Association between Transcription Factor Expression and Chromatin Accessibility Reveals Regulators of Chromatin Accessibility. - David Lamparter 002; Daniel Marbach; Rico Rueedi; Sven Bergmann; Zoltán Kutalik (PLoS Comput. Biol., 2017)

MONET: a toolbox integrating top-performing methods for network modularization. - Mattia Tomasoni; Sergio Gómez; Jake Crawford; Weijia Zhang 001; Sarvenaz Choobdar; Daniel Marbach; Sven Bergmann (Bioinform., 2020)