Constructing maps using the span and inclusion relations. - Daniel P. Fasulo; Tao Jiang 001; Richard M. Karp; Nitin Sharma 002 (RECOMB, 1998)

An Algorithmic Approach to Multiple Complete Digest Mapping. - Daniel P. Fasulo; Tao Jiang 001; Richard M. Karp; Reuben J. Settergren; Edward C. Thayer (J. Comput. Biol., 1999)

Visualization challenges for a new cyberpharmaceutical computing paradigm. - Russell J. Turner; Kabir Chaturvedi; Nathan Edwards; Daniel P. Fasulo; Aaron L. Halpern; Daniel H. Huson; Oliver Kohlbacher; Jason R. Miller; Knut Reinert; Karin A. Remington; Russell Schwartz; Brian Walenz; et al. (IEEE Symposium on Parallel and Large-Data Visualization and Graphics, 2001)

Efficiently detecting polymorphisms during the fragment assembly process. - Daniel P. Fasulo; Aaron L. Halpern; Ian M. Dew; Clark M. Mobarry (ISMB, 2002)

A Fast Boosting-Based Screening Method for Large-scale Association Study in Complex Traits with Genetic Heterogeneity. - Lu-Yong Wang; Daniel P. Fasulo (EMBC, 2006)

Alignment of Mass Spectrometry Data by Clique Finding and Optimization. - Daniel P. Fasulo; Anne-Katrin Emde; Lu-Yong Wang; Karin Noy; Nathan Edwards (Systems Biology and Computational Proteomics, 2006)

Exploiting Interactions among Polymorphisms Contributing to Complex Disease Traits with Boosted Generative Modeling. - Lu-Yong Wang; Dorin Comaniciu; Daniel P. Fasulo (J. Comput. Biol., 2006)

Robust Estimation and Graph-Based Meta Clustering for LC-MS Feature Extraction. - Karin Noy; Daniel P. Fasulo (BIBM, 2007)

Improved model-based, platform-independent feature extraction for mass spectrometry. - Karin Noy; Daniel P. Fasulo (Bioinform., 2007)

Improving de novo sequence assembly using machine learning and comparative genomics for overlap correction. - Lance E. Palmer; Mathäus Dejori; Randall A. Bolanos; Daniel P. Fasulo (BMC Bioinform., 2010)

EDAR: An Efficient Error Detection and Removal Algorithm for Next Generation Sequencing Data. - Xiaohong Zhao; Lance E. Palmer; Randall A. Bolanos; Cristian Mircean; Daniel P. Fasulo; Gayle M. Wittenberg (J. Comput. Biol., 2010)

Shape-Based Feature Matching Improves Protein Identification via LC-MS and Tandem MS. - Karin Noy; Fadi Towfic; Gayle M. Wittenberg; Daniel P. Fasulo (J. Comput. Biol., 2011)