EXTREME: an online EM algorithm for motif discovery. - Daniel Quang; Xiaohui Xie (Bioinform., 2014)

DANN: a deep learning approach for annotating the pathogenicity of genetic variants. - Daniel Quang; Yifei Chen; Xiaohui Xie (Bioinform., 2015)

Understanding Sequence Conservation With Deep Learning. - Yi Li 021; Daniel Quang; Xiaohui Xie (BCB, 2017)

Efficient large-scale machine learning algorithms for genomic sequences. - Daniel Quang (2017)

YAMDA: thousandfold speedup of EM-based motif discovery using deep learning libraries and GPU. - Daniel Quang; Yuanfang Guan; Stephen C. J. Parker (Bioinform., 2018)