Experimenting with database segmentation size vs time performance for mpiBLAST on an IBM HS21 blade cluster. - Daniel R. Harris; Jerzy W. Jaromczyk; Christopher L. Schardl (BMC Bioinform., 2010)

Improving Scalability and Performance of i2b2 Query Processing Using Common Table Expressions. - Darren W. Henderson; Daniel R. Harris; Ramakanth Kavuluru; Todd R. Johnson (AMIA, 2012)

A Knowledge-Based Approach to Syntactic Disambiguation of Biomedical Noun Compounds. - Ramakanth Kavuluru; Daniel R. Harris (COLING (Posters), 2012)

Unsupervised Extraction of Diagnosis Codes from EMRs Using Knowledge-Based and Extractive Text Summarization Techniques. - Ramakanth Kavuluru; Sifei Han; Daniel R. Harris (Canadian AI, 2013)

An adaptive landscape for training in the essentials of next gen sequencing data acquisition and bioinformatic analysis. - Mark L. Farman; Patrick Calie; Jerzy W. Jaromczyk; Jolanta Jaromczyk; Neil Moore; Daniel R. Harris; Christopher L. Schardl (BMC Bioinform., 2014)

Using Common Table Expressions to Build a Scalable Boolean Query Generator for Clinical Data Warehouses. - Daniel R. Harris; Darren W. Henderson; Ramakanth Kavuluru; Arnold J. Stromberg; Todd R. Johnson (IEEE J. Biomed. Health Informatics, 2014)

Modeling Reusable and Interoperable Faceted Browsing Systems with Category Theory. - Daniel R. Harris (IRI, 2015)

Modeling Faceted Browsing with Category Theory to Support Interoperability and Reuse. - Daniel R. Harris (JCDL, 2015)

Informatics-based challenges of building collaborative healthcare research and analysis networks from rural community health centers. - Daniel R. Harris; Tamela J. Harper; Darren W. Henderson; Keith W. Henry; Jeffery C. Talbert (BHI, 2016)

i2b2t2: Unlocking Visualization for Clinical Research. - Daniel R. Harris; Darren W. Henderson (CRI, 2016)

Using i2b2 to bootstrap rural health analytics and learning networks. - Daniel R. Harris; Adam D. Baus; Tamela J. Harper; Traci D. Jarrett; Cecil R. Pollard; Jeffery C. Talbert (EMBC, 2016)

Modeling Integration and Reuse of Heterogeneous Terminologies in Faceted Browsing Systems. - Daniel R. Harris (IRI, 2016)

Foundations of reusable and interoperable facet models using category theory. - Daniel R. Harris (Inf. Syst. Frontiers, 2016)

Using closure tables to enable cross-querying of ontologies in database-driven applications. - Daniel R. Harris; Darren W. Henderson; Jeffery C. Talbert (BHI, 2017)

Rapid and Reusable Text Visualization and Exploration Development with DELVE. - Daniel R. Harris; Ramakanth Kavuluru; Jerzy W. Jaromczyk; Todd R. Johnson (CRI, 2017)

Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics: Burns, TN, USA. April 21-23, 2017. - Eric C. Rouchka; Julia H. Chariker; David Tieri; Juw Won Park; Shreedharkumar D. Rajurkar; Vikas Singh; Nishchal K. Verma; Yan Cui 001; Mark L. Farman; Bradford Condon; Neil Moore; Jerzy W. Jaromczyk; et al. (BMC Bioinform., 2017)

Retrospective analysis of health claims to evaluate pharmacotherapies with potential for repurposing: Association of bupropion and stimulant use disorder remission. - Emily R. Hankosky; Heather M. Bush; Linda P. Dwoskin; Daniel R. Harris; Darren W. Henderson; Guo-Qiang Zhang 001; Patricia R. Freeman; Jeffery C. Talbert (AMIA, 2018)

bench4gis: Benchmarking Privacy-aware Geocoding with Open Big Data. - Daniel R. Harris; Chris Delcher (IEEE BigData, 2019)

Improving the Utility of Tobacco-Related Problem List Entries Using Natural Language Processing. - Daniel R. Harris; Darren W. Henderson; Alexandria Corbeau (AMIA, 2020)

Leveraging Differential Privacy in Geospatial Analyses of Standardized Healthcare Data. - Daniel R. Harris (IEEE BigData, 2020)

Challenges and Barriers in Applying Natural Language Processing to Medical Examiner Notes from Fatal Opioid Poisoning Cases. - Daniel R. Harris; Christian Eisinger; Yanning Wang; Chris Delcher (IEEE BigData, 2020)

Generalizing Dynamic Dashboards for Community-Engaged Interventions. - Daniel R. Harris; Daniel Redmond; Jeffery C. Talbert (AMIA, 2021)

Integrating Medical and Dental Histories for Translational Science. - Darren W. Henderson; Malini S. Kirakodu; James R. Aaron; Tamela J. Harper; Daniel R. Harris; Jeffery C. Talbert; Luciana M. Shaddox (AMIA, 2021)

Extracting Semantics from Census-based Reference Data. - Daniel R. Harris; Nima Seyedtalebi (ICSC, 2021)

An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C). - Sijia Liu 002; Andrew Wen; Liwei Wang 010; Huan He; Sunyang Fu; Robert T. Miller; Andrew E. Williams; Daniel R. Harris; Ramakanth Kavuluru; Mei Liu; Noor Abu-El-Rub; Rui Zhang 028; et al. (CoRR, 2021)

geoPIPE: Geospatial Pipeline for Enhancing Open Data for Substance Use Disorders Research. - Daniel R. Harris; Nick Anthony; Mojde Mir; Chris Delcher (AMIA, 2022)

An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C). - Sijia Liu 002; Andrew Wen; Liwei Wang 010; Huan He; Sunyang Fu; Robert T. Miller; Andrew E. Williams; Daniel R. Harris; Ramakanth Kavuluru; Mei Liu; Noor Abu-El-Rub; Dalton Schutte; et al. (J. Am. Medical Informatics Assoc., 2023)

Large Language Models for Drug Overdose Prediction from Longitudinal Medical Records. - Md Sultan Al Nahian; Chris Delcher; Daniel R. Harris; Peter Akpunonu; Ramakanth Kavuluru (CoRR, 2025)