Data-Driven Ontologies. - James C. Costello; Daniel R. Schrider; Jeff Gehlhausen; Mehmet M. Dalkilic (Pacific Symposium on Biocomputing, 2009)

All Human-Specific Gene Losses Are Present in the Genome as Pseudogenes. - Daniel R. Schrider; James C. Costello; Matthew W. Hahn (J. Comput. Biol., 2009)

Detecting Highly Differentiated Copy-Number Variants from Pooled Population Sequencing. - Daniel R. Schrider; David J. Begun; Matthew W. Hahn (Pacific Symposium on Biocomputing, 2013)

Extensive Error in the Number of Genes Inferred from Draft Genome Assemblies. - James F. Denton; Jose Lugo-Martinez; Abraham E. Tucker; Daniel R. Schrider; Wesley C. Warren; Matthew W. Hahn (PLoS Comput. Biol., 2014)

Discoal: flexible coalescent simulations with selection. - Andrew D. Kern; Daniel R. Schrider (Bioinform., 2016)

Reliable estimation of tree branch lengths using deep neural networks. - Anton Suvorov; Daniel R. Schrider (PLoS Comput. Biol., 2024)