Improvements to services at the European Nucleotide Archive. - Rasko Leinonen; Ruth Akhtar; Ewan Birney; James K. Bonfield; Lawrence Bower; Matthew Corbett; Ying Cheng; Fehmi Demiralp; Nadeem Faruque; Neil Goodgame; Richard Gibson; Gemma Hoad; et al. (Nucleic Acids Res., 2010)

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels. - Marcel H. Schulz; Daniel R. Zerbino; Martin Vingron; Ewan Birney (Bioinform., 2012)

The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability. - Jing-Woei Li; Dan M. Bolser; Magnus Manske; Federico Manuel Giorgi; Nikolay Vyahhi; Björn Usadel; Bernardo J. Clavijo; Ting-Fung Chan; Nathalie Wong; Daniel R. Zerbino; Maria Victoria Schneider (Briefings Bioinform., 2013)

HAL: a hierarchical format for storing and analyzing multiple genome alignments. - Glenn Hickey; Benedict Paten; Dent Earl; Daniel R. Zerbino; David Haussler (Bioinform., 2013)

Building a Pangenome Reference for a Population. - Ngan Nguyen; Glenn Hickey; Daniel R. Zerbino; Brian J. Raney; Dent Earl; Joel Armstrong; David Haussler; Benedict Paten (RECOMB, 2014)

WiggleTools: parallel processing of large collections of genome-wide datasets for visualization and statistical analysis. - Daniel R. Zerbino; Nathan Johnson; Thomas Juettemann; Steven P. Wilder; Paul Flicek (Bioinform., 2014)

A unifying model of genome evolution under parsimony. - Benedict Paten; Daniel R. Zerbino; Glenn Hickey; David Haussler (BMC Bioinform., 2014)

Ensembl 2014. - Paul Flicek; M. Ridwan Amode; Daniel Barrell; Kathryn Beal; Konstantinos Billis; Simon Brent; Denise Carvalho-Silva; Peter Clapham; Guy Coates; Stephen Fitzgerald; Laurent Gil; Carlos García-Girón; et al. (Nucleic Acids Res., 2014)

Building a Pan-Genome Reference for a Population. - Ngan Nguyen; Glenn Hickey; Daniel R. Zerbino; Brian J. Raney; Dent Earl; Joel Armstrong; W. James Kent; David Haussler; Benedict Paten (J. Comput. Biol., 2015)

Ensembl 2015. - Fiona Cunningham; M. Ridwan Amode; Daniel Barrell; Kathryn Beal; Konstantinos Billis; Simon Brent; Denise Carvalho-Silva; Peter Clapham; Guy Coates; Stephen Fitzgerald; Laurent Gil; Carlos García-Girón; et al. (Nucleic Acids Res., 2015)

Ensembl regulation resources. - Daniel R. Zerbino; Nathan Johnson; Thomas Juettemann; Daniel Sheppard; Steven P. Wilder; Ilias Lavidas; Michael Nuhn; Emily Perry; Quentin Raffaillac-Desfosses; Daniel Sobral; Damian Keefe; Stefan Gräf; et al. (Database J. Biol. Databases Curation, 2016)

Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs. - Daniel R. Zerbino; Tracy Ballinger; Benedict Paten; Glenn Hickey; David Haussler (BMC Bioinform., 2016)

Ensembl 2016. - Andrew D. Yates; Wasiu A. Akanni; M. Ridwan Amode; Daniel Barrell; Konstantinos Billis; Denise Carvalho-Silva; Carla A. Cummins; Peter Clapham; Stephen Fitzgerald; Laurent Gil; Carlos García-Girón; Leo Gordon; et al. (Nucleic Acids Res., 2016)

Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation. - Magali Ruffier; Andreas Kähäri; Monika Komorowska; Stephen Keenan; Matthew R. Laird; Ian Longden; Glenn Proctor; Steve Searle; Daniel M. Staines; Kieron R. Taylor; Alessandro Vullo; Andrew D. Yates; et al. (Database J. Biol. Databases Curation, 2017)

Ensembl 2017. - Bronwen L. Aken; Premanand Achuthan; Wasiu A. Akanni; M. Ridwan Amode; Friederike Bernsdorff; Jyothish Bhai; Konstantinos Billis; Denise Carvalho-Silva; Carla A. Cummins; Peter Clapham; Laurent Gil; Carlos García-Girón; et al. (Nucleic Acids Res., 2017)

Ensembl 2018. - Daniel R. Zerbino; Premanand Achuthan; Wasiu A. Akanni; M. Ridwan Amode; Daniel Barrell; Jyothish Bhai; Konstantinos Billis; Carla A. Cummins; Astrid Gall; Carlos García-Girón; Laurent Gil; Leo Gordon; et al. (Nucleic Acids Res., 2018)

Sequence tube maps: making graph genomes intuitive to commuters. - Wolfgang Beyer; Adam M. Novak; Glenn Hickey; Jeffrey Chan; Vanessa Tan; Benedict Paten; Daniel R. Zerbino (Bioinform., 2019)

Ensembl 2019. - Fiona Cunningham; Premanand Achuthan; Wasiu A. Akanni; James E. Allen; M. Ridwan Amode; Irina M. Armean; Ruth Bennett; Jyothish Bhai; Konstantinos Billis; Sanjay Boddu; Carla A. Cummins; Claire Davidson; et al. (Nucleic Acids Res., 2019)

GENCODE reference annotation for the human and mouse genomes. - Adam Frankish; Mark Diekhans; Anne-Maud Ferreira; Rory Johnson; Irwin Jungreis; Jane E. Loveland; Jonathan M. Mudge; Cristina Sisu; James C. Wright; Joel Armstrong; If Barnes; Andrew E. Berry; et al. (Nucleic Acids Res., 2019)

The open targets post-GWAS analysis pipeline. - Gareth Peat; William Jones; Michael Nuhn; José Carlos Marugán; William Newell; Ian Dunham; Daniel R. Zerbino (Bioinform., 2020)

Ensembl 2020. - Andrew D. Yates; Premanand Achuthan; Wasiu A. Akanni; James E. Allen; Jamie Allen; Jorge Álvarez-Jarreta; M. Ridwan Amode; Irina M. Armean; Andrey G. Azov; Ruth Bennett; Jyothish Bhai; Konstantinos Billis; et al. (Nucleic Acids Res., 2020)

GENCODE 2021. - Adam Frankish; Mark Diekhans; Irwin Jungreis; Julien Lagarde; Jane E. Loveland; Jonathan M. Mudge; Cristina Sisu; James C. Wright; Joel Armstrong; If Barnes; Andrew E. Berry; Alexandra Bignell; et al. (Nucleic Acids Res., 2021)

Ensembl 2021. - Kevin L. Howe; Premanand Achuthan; James E. Allen; Jamie Allen; Jorge Álvarez-Jarreta; M. Ridwan Amode; Irina M. Armean; Andrey G. Azov; Ruth Bennett; Jyothish Bhai; Konstantinos Billis; Sanjay Boddu; et al. (Nucleic Acids Res., 2021)

Ensembl 2022. - Fiona Cunningham; James E. Allen; Jamie Allen; Jorge Álvarez-Jarreta; M. Ridwan Amode; Irina M. Armean; Olanrewaju Austine-Orimoloye; Andrey G. Azov; If Barnes; Ruth Bennett; Andrew E. Berry; Jyothish Bhai; et al. (Nucleic Acids Res., 2022)

The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data. - Nishadi De Silva; Jyothish Bhai; Marc Chakiachvili; Bruno Contreras-Moreira; Carla A. Cummins; Adam Frankish; Astrid Gall; Thiago Augusto Lopes Genez; Kevin L. Howe; Sarah E. Hunt; Fergal J. Martin; Benjamin Moore; et al. (Nucleic Acids Res., 2022)