Optimal spontaneous activity in neural network modeling. - Daniel Remondini; Nathan Intrator; Gastone C. Castellani; F. Bersani; Leon N. Cooper (Neurocomputing, 2002)

The Effect of Noise on a Class of Energy-Based Learning Rules. - Armando Bazzani; Daniel Remondini; Nathan Intrator; Gastone C. Castellani (Neural Comput., 2003)

A General Learning Rule for Network Modeling of Neuroimmune Interactome. - Daniel Remondini; Paolo Tieri; Silvana Valensin; Ettore Verondini; Claudio Franceschi; F. Bersani; Gastone C. Castellani (WIRN/NAIS, 2005)

Quantifying the relevance of different mediators in the human immune cell network. - Paolo Tieri; Silvana Valensin; Vito Latora; Gastone C. Castellani; Massimo Marchiori; Daniel Remondini; Claudio Franceschi (Bioinform., 2005)

Correlation analysis reveals the emergence of coherence in the gene expression dynamics following system perturbation. - Nicola Neretti; Daniel Remondini; Marc Tatar; John M. Sedivy; Michela Pierini; Dawn Mazzatti; Jonathan Powell; Claudio Franceschi; Gastone C. Castellani (BMC Bioinform., 2007)

Networks from Gene Expression Time Series: Characterization of Correlation Patterns. - Daniel Remondini; Nicola Neretti; Claudio Franceschi; Paolo Tieri; John M. Sedivy; Luciano Milanesi; Gastone C. Castellani (Int. J. Bifurc. Chaos, 2007)

Reconstructing networks of pathways via significance analysis of their intersections. - Mirko Francesconi; Daniel Remondini; Nicola Neretti; John M. Sedivy; Leon N. Cooper; Ettore Verondini; Luciano Milanesi; Gastone C. Castellani (BMC Bioinform., 2008)

Trends in modeling Biomedical Complex Systems. - Luciano Milanesi; Paolo Romano 001; Gastone C. Castellani; Daniel Remondini; Pietro Liò (BMC Bioinform., 2009)

A measure of centrality based on the spectrum of the Laplacian - Scott D. Pauls; Daniel Remondini (CoRR, 2011)

Weighted Multiplex Networks. - Giulia Menichetti; Daniel Remondini; Pietro Panzarasa; Raul J. Mondragón; Ginestra Bianconi (CoRR, 2013)

Systems medicine of inflammaging. - Gastone C. Castellani; Giulia Menichetti; Paolo Garagnani; Maria Giulia Bacalini; Chiara Pirazzini; Claudio Franceschi; Sebastiano Collino; Claudia Sala; Daniel Remondini; Enrico Giampieri; Ettore Mosca; Matteo Bersanelli; et al. (Briefings Bioinform., 2016)

Methods for the integration of multi-omics data: mathematical aspects. - Matteo Bersanelli; Ettore Mosca; Daniel Remondini; Enrico Giampieri; Claudia Sala; Gastone C. Castellani; Luciano Milanesi (BMC Bioinform., 2016)

Stochastic neutral modelling of the Gut Microbiota's relative species abundance from next generation sequencing data. - Claudia Sala; Silvia Vitali; Enrico Giampieri; Ìtalo Faria do Valle; Daniel Remondini; Paolo Garagnani; Matteo Bersanelli; Ettore Mosca; Luciano Milanesi; Gastone C. Castellani (BMC Bioinform., 2016)

Optimized pipeline of MuTect and GATK tools to improve the detection of somatic single nucleotide polymorphisms in whole-exome sequencing data. - Ìtalo Faria do Valle; Enrico Giampieri; Giorgia Simonetti; Antonella Padella; Marco Manfrini; Anna Ferrari; Cristina Papayannidis; Isabella Zironi; Marianna Garonzi; Simona Bernardi 002; Massimo Delledonne; Giovanni Martinelli; et al. (BMC Bioinform., 2016)

Statistical modelling of CG interdistance across multiple organisms. - A. Merlotti; Ìtalo Faria do Valle; Gastone C. Castellani; Daniel Remondini (BMC Bioinform., 2018)

Galvanotactic Phenomenon Induced by Non-Contact Electrostatic Field: Investigation in a Scratch Assay. - Laura Caramazza; Annalisa De Angelis; Daniel Remondini; Gastone C. Castellani; Micaela Liberti; Francesca Apollonio; Isabella Zironi (EMBC, 2020)

International expert communities on Twitter become more isolated during the COVID-19 pandemic. - Francesco Durazzi; Martin Müller; Marcel Salathé; Daniel Remondini (CoRR, 2020)

WISDoM: Characterizing Neurological Time Series With the Wishart Distribution. - Carlo Mengucci; Daniel Remondini; Gastone C. Castellani; Enrico Giampieri (Frontiers Neuroinformatics, 2020)

rFBP: Replicated Focusing Belief Propagation algorithm. - Nico Curti; Daniele Dall'Olio; Daniel Remondini; Gastone C. Castellani; Enrico Giampieri (J. Open Source Softw., 2020)

Characterization and comparison of gene-centered human interactomes. - Ettore Mosca; Matteo Bersanelli; Tommaso Matteuzzi; Noemi Di Nanni; Gastone C. Castellani; Luciano Milanesi; Daniel Remondini (Briefings Bioinform., 2021)

Impact of concurrency on the performance of a whole exome sequencing pipeline. - Daniele Dall'Olio; Nico Curti; Eugenio Fonzi; Claudia Sala; Daniel Remondini; Gastone C. Castellani; Enrico Giampieri (BMC Bioinform., 2021)

Correction to: Impact of concurrency on the performance of a whole exome sequencing pipeline. - Daniele Dall'Olio; Nico Curti; Eugenio Fonzi; Claudia Sala; Daniel Remondini; Gastone C. Castellani; Enrico Giampieri (BMC Bioinform., 2021)

Effectiveness of Biologically Inspired Neural Network Models in Learning and Patterns Memorization. - Lorenzo Squadrani; Nico Curti; Enrico Giampieri; Daniel Remondini; Brian S. Blais; Gastone C. Castellani (Entropy, 2022)

Data Science for Health Image Alignment: A User-Friendly Open-Source ImageJ/Fiji Plugin for Aligning Multimodality/Immunohistochemistry/Immunofluorescence 2D Microscopy Images. - Filippo Piccinini; Marcella Tazzari; Maria Maddalena Tumedei; Mariachiara Stellato; Daniel Remondini; Enrico Giampieri; Giovanni Martinelli; Gastone C. Castellani; Antonella Carbonaro (Sensors, 2024)

Radiomic analysis of 3D spheroids using 2D brightfield images. - Mariachiara Stellato; Martyna Malgorzata Rydzyk; Micaela Pannella; Francesca Rossi 005; Concettina Cappadone; Daniel Remondini; Jae-Chul Pyun; Nicola Normanno; Toni Ibrahim; Gastone C. Castellani; Emil Malucelli; Stefano Iotti; et al. (Biomed. Signal Process. Control., 2025)