fishStan: Hierarchical Bayesian models for fisheries. - Richard A. Erickson; Daniel S. Stich; Jillian L. Hebert (J. Open Source Softw., 2022)

dia: An R package for the National Oceanic and Atmospheric Administration dam impact analysis. - Daniel S. Stich; Julie L. Nieland; Timothy F. Sheehan (J. Open Source Softw., 2025)

anadrofish: Anadromous fish population responses to dams. - Daniel S. Stich; Joshua D. Hardesty; Nicholas T. Jordan; Samuel G. Roy; Timothy F. Sheehan; Shawn D. Snyder; Joseph D. Zydlewski (J. Open Source Softw., 2025)