A genome-scale metabolic flux model of Escherichia coli K-12 derived from the EcoCyc database. - Daniel S. Weaver; Ingrid M. Keseler; Amanda Mackie; Ian T. Paulsen; Peter D. Karp (BMC Syst. Biol., 2014)

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. - Ron Caspi; Tomer Altman; Richard Billington; Kate Dreher; Hartmut Foerster; Carol A. Fulcher; Timothy A. Holland; Ingrid M. Keseler; Anamika Kothari; Aya Kubo; Markus Krummenacker; Mario Latendresse; et al. (Nucleic Acids Res., 2014)

Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology. - Peter D. Karp; Mario Latendresse; Suzanne M. Paley; Markus Krummenacker; Quang Ong; Richard Billington; Anamika Kothari; Daniel S. Weaver; Thomas J. Lee; Pallavi Subhraveti; Aaron Spaulding; Carol A. Fulcher; et al. (Briefings Bioinform., 2016)

Pathway collages: personalized multi-pathway diagrams. - Suzanne M. Paley; Paul E. O'Maille; Daniel S. Weaver; Peter D. Karp (BMC Bioinform., 2016)

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. - Ron Caspi; Richard Billington; Luciana Ferrer; Hartmut Foerster; Carol A. Fulcher; Ingrid M. Keseler; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Lukas A. Mueller; Quang Ong; Suzanne M. Paley; et al. (Nucleic Acids Res., 2016)

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12. - Ingrid M. Keseler; Amanda Mackie; Alberto Santos-Zavaleta; Richard Billington; César Bonavides-Martínez; Ron Caspi; Carol A. Fulcher; Socorro Gama-Castro; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Luis Muñiz-Rascado; et al. (Nucleic Acids Res., 2017)

How accurate is automated gap filling of metabolic models? - Peter D. Karp; Daniel S. Weaver; Mario Latendresse (BMC Syst. Biol., 2018)