GandrKB–ontological microarray annotation and visualization. - Daniel Schober; Ulf Leser; Martin Zenke; Jens G. Reich (Bioinform., 2005)

Towards a Reference Terminology for Ontology Research and Development in the Biomedical Domain. - Barry Smith 001; Waclaw Kusnierczyk; Daniel Schober; Werner Ceusters (KR-MED, 2006)

Ein Repräsentationsformat zur standardisierten Beschreibung und wissensbasierten Modellierung genomischer Expressionsdaten - Daniel Schober (2006)

The OWL of Biomedical Investigations. - Mélanie Courtot; William J. Bug; Frank Gibson; Allyson L. Lister; James Malone; Daniel Schober; Ryan Remy Brinkman; Alan Ruttenberg (OWLED, 2008)

Facilitating the development of controlled vocabularies for metabolomics technologies with text mining. - Irena Spasic; Daniel Schober; Susanna-Assunta Sansone; Dietrich Rebholz-Schuhmann; Douglas B. Kell; Norman W. Paton (BMC Bioinform., 2008)

Survey-based naming conventions for use in OBO Foundry ontology development. - Daniel Schober; Barry Smith 001; Suzanna E. Lewis; Waclaw Kusnierczyk; Jane Lomax; Chris Mungall; Chris F. Taylor; Philippe Rocca-Serra; Susanna-Assunta Sansone (BMC Bioinform., 2009)

Ensuring HL7-based information model requirements within an ontology framework. - David Ouagne; Nadia Nadah; Daniel Schober; Rémy Choquet; Douglas Teodoro; Dirk Colaert; Stefan Schulz 001; Marie-Christine Jaulent; Christel Daniel (MedInfo, 2010)

The DebugIT Core Ontology: semantic integration of antibiotics resistance patterns. - Daniel Schober; Martin Boeker; Jessica Bullenkamp; Csaba Huszka; Kristof Depraetere; Douglas Teodoro; Nadia Nadah; Rémy Choquet; Christel Daniel; Stefan Schulz 001 (MedInfo, 2010)

Bridging the semantics gap between terminologies, ontologies, and information models. - Stefan Schulz 001; Daniel Schober; Christel Daniel; Marie-Christine Jaulent (MedInfo, 2010)

Developing DCO: The DebugIT core ontology for antibiotics resistence modelling. - Daniel Schober; Martin Boeker; Stefan Schulz 001; Ilinca Tudose (Semantic Mining in Biomedicine, 2010)

Interoperability Driven Integration of Biomedical Data Sources. - Douglas Teodoro; Rémy Choquet; Daniel Schober; Giovanni Mels; Emilie Pasche; Patrick Ruch; Christian Lovis (MIE, 2011)

A T-Box Generator for Testing Scalability of OWL Mereotopological Patterns. - Martin Boeker; Janna Hastings; Daniel Schober; Stefan Schulz 001 (OWLED, 2011)

MIREOT: The minimum information to reference an external ontology term. - Mélanie Courtot; Frank Gibson; Allyson L. Lister; James Malone; Daniel Schober; Ryan Remy Brinkman; Alan Ruttenberg (Appl. Ontology, 2011)

Overcoming the ontology enrichment bottleneck with Quick Term Templates. - Philippe Rocca-Serra; Alan Ruttenberg; Martin J. O'Connor; Patricia L. Whetzel; Daniel Schober; Jay Greenbaum; Mélanie Courtot; Ryan Remy Brinkman; Susanna-Assunta Sansone; Richard H. Scheuermann; Bjoern Peters (Appl. Ontology, 2011)

Ontology patterns for tabular representations of biomedical knowledge on neglected tropical diseases. - Filipe Santana; Daniel Schober; Zulma Medeiros; Fred Freitas; Stefan Schulz 001 (Bioinform., 2011)

Unintended consequences of existential quantifications in biomedical ontologies. - Martin Boeker; Ilinca Tudose; Janna Hastings; Daniel Schober; Stefan Schulz 001 (BMC Bioinform., 2011)

Teaching Good Biomedical Ontology Design. - Martin Boeker; Daniel Schober; Djamila Raufie; Niels Grewe; Johannes Röhl; Ludger Jansen; Stefan Schulz 001 (ICBO, 2012)

Checking Class Labels against Naming Conventions: First experiences with the OntoCheck Protégé plugin. - Daniel Schober; Vojtech Svátek; Martin Boeker (ICBO, 2012)

Towards an ontological representation of morbidity and mortality in Description Logics. - Filipe Santana; Fred Freitas; Roberta Fernandes; Zulma Medeiros; Daniel Schober (J. Biomed. Semant., 2012)

OntoCheck: verifying ontology naming conventions and metadata completeness in Protégé 4. - Daniel Schober; Ilinca Tudose; Vojtech Svátek; Martin Boeker (J. Biomed. Semant., 2012)

Proposed actions are no actions: re-modeling an ontology design pattern with a realist top-level ontology. - Djamila Seddig-Raufie; Ludger Jansen; Daniel Schober; Martin Boeker; Niels Grewe; Stefan Schulz 001 (J. Biomed. Semant., 2012)

Measuring the Effect of a Guideline-based Training on Ontology Design with a Competency Questions based Evaluation Approach. - Martin Boeker; Niels Grewe; Johannes Röhl; Daniel Schober; Stefan Schulz 001; Djamila Seddig-Raufie; Ludger Jansen (GI-Jahrestagung, 2013)

Ontological analysis of controlled vocabularies used in PSI/MSI supported XML standards. - Daniel Schober; Gerhard Mayer; Annick Moing; Martin Eisenacher; Steffen Neumann (GI-Jahrestagung, 2013)

DebugIT: Ontology-mediated Layered Data Integration for Real-time Antibiotics Resistance Surveillance. - Daniel Schober; Rémy Choquet; Kristof Depraetere; Frank Enders; Philipp Daumke; Marie-Christine Jaulent; Douglas Teodoro; Emilie Pasche; Christian Lovis; Martin Boeker (SWAT4LS, 2014)

Towards standardized evidence descriptors for metabolite annotations. - Daniel Schober; Reza M. Salek; Steffen Neumann (ODLS, 2016)

The future of metabolomics in ELIXIR. - Merlijn N. van Rijswijk; Charlie Beirnaert; Christophe Caron; Marta Cascante; Victoria Dominguez Del Angel; Warwick B. Dunn; Timothy M. D. Ebbels; Franck Giacomoni; Alejandra N. González-Beltrán; Thomas Hankemeier; Kenneth Haug; Jose L. Izquierdo-García; et al. (F1000Research, 2017)

Interoperable and scalable data analysis with microservices: applications in metabolomics. - Payam Emami Khoonsari; Pablo A. Moreno; Sven Bergmann; Joachim Burman; Marco Capuccini; Matteo Carone; Marta Cascante; Pedro de Atauri; Carles Foguet; Alejandra N. González-Beltrán; Thomas Hankemeier; Kenneth Haug; et al. (Bioinform., 2019)

FAIR Computational Workflows. - Carole A. Goble; Sarah Cohen-Boulakia; Stian Soiland-Reyes; Daniel Garijo; Yolanda Gil; Michael R. Crusoe; Kristian Peters; Daniel Schober (Data Intell., 2020)

Vision-based robot manipulation of transparent liquid containers in a laboratory setting. - Daniel Schober; Ronja Güldenring; James Love; Lazaros Nalpantidis (SII, 2025)