The Flannotator - a gene and protein expression annotation tool for Drosophila melanogaster. - Edward Ryder; H. Spriggs; E. Drummond; Daniel St Johnston; Steven Russell (Bioinform., 2009)

Protein Tracking By CNN-Based Candidate Pruning And Two-Step Linking With Bayesian Network. - Mariia Dmitrieva; Helen L. Zenner; Jennifer Richens; Daniel St Johnston; Jens Rittscher (MLSP, 2019)

Short Trajectory Segmentation with 1D UNET Framework: Application to Secretory Vesicle Dynamics. - Mariia Dmitrieva; Joël Lefebvre; Kristofer delas Peñas; Helen L. Zenner; Jennifer Richens; Daniel St Johnston; Jens Rittscher (ISBI, 2020)

Single-Molecule Localization Microscopy Reconstruction Using Noise2Noise for Super-Resolution Imaging of Actin Filaments. - Joël Lefebvre; Avelino Javer; Mariia Dmitrieva; Jens Rittscher; Bohdan Lewków; Edward Allgeyer; George Sirinakis; Daniel St Johnston (ISBI, 2020)

Extracting Axial Depth and Trajectory Trend Using Astigmatism, Gaussian Fitting, and CNNs for Protein Tracking. - Kristofer delas Peñas; Mariia Dmitrieva; Joël Lefebvre; Helen L. Zenner; Edward Allgeyer; Martin Booth; Daniel St Johnston; Jens Rittscher (ISBI, 2020)