BALL - biochemical algorithms library 1.3. - Andreas Hildebrandt 001; Anna Katharina Dehof; Alexander Rurainski; Andreas Bertsch; Marcel Schumann; Nora C. Toussaint; Andreas Moll; Daniel Stöckel; Stefan Nickels; Sabine C. Mueller; Hans-Peter Lenhof; Oliver Kohlbacher (BMC Bioinform., 2010)

History-alignment models for bias-aware prediction of virological response to HIV combination therapy. - Jasmina Bogojeska; Daniel Stöckel; Maurizio Zazzi; Rolf Kaiser; Francesca Incardona; Michal Rosen-Zvi; Thomas Lengauer (AISTATS, 2012)

PresentaBALL - A powerful package for presentations and lessons in structural biology. - Stefan Nickels; Daniel Stöckel; Sabine C. Mueller; Hans-Peter Lenhof; Andreas Hildebrandt 001; Anna Katharina Dehof (BioVis, 2013)

NetworkTrail - a web service for identifying and visualizing deregulated subnetworks. - Daniel Stöckel; Oliver Müller 003; Tim Kehl; Andreas Gerasch; Christina Backes; Alexander Rurainski; Andreas Keller; Michael Kaufmann 001; Hans-Peter Lenhof (Bioinform., 2013)

ballaxy: web services for structural bioinformatics. - Anna Katharina Hildebrandt; Daniel Stöckel; Nina M. Fischer; Luis de la Garza; Jens Krüger 002; Stefan Nickels; Marc Röttig; Charlotta Schärfe; Marcel Schumann; Philipp Thiel; Hans-Peter Lenhof; Oliver Kohlbacher; et al. (Bioinform., 2015)

CausalTrail: Testing hypothesis using causal Bayesian networks. - Daniel Stöckel; Florian Schmidt 003; Patrick Trampert; Hans-Peter Lenhof (F1000Research, 2015)

Network-based interactive navigation and analysis of large biological datasets. - Andreas Gerasch; Jan Küntzer; Peter Niermann; Daniel Stöckel; Michael Kaufmann 001; Oliver Kohlbacher; Hans-Peter Lenhof (it Inf. Technol., 2015)

Multi-omics enrichment analysis using the GeneTrail2 web service. - Daniel Stöckel; Tim Kehl; Patrick Trampert; Lara Schneider; Christina Backes; Nicole Ludwig 001; Andreas Gerasch; Michael Kaufmann 001; Manfred Gessler; Norbert M. Graf; Eckart Meese; Andreas Keller; et al. (Bioinform., 2016)

Bioinformatics methods for the genetic and molecular characterisation of cancer. - Daniel Stöckel (2016)

miRPathDB: a new dictionary on microRNAs and target pathways. - Christina Backes; Tim Kehl; Daniel Stöckel; Tobias Fehlmann; Lara Schneider; Eckart Meese; Hans-Peter Lenhof; Andreas Keller (Nucleic Acids Res., 2017)

RegulatorTrail: a web service for the identification of key transcriptional regulators. - Tim Kehl; Lara Schneider; Florian Schmidt 003; Daniel Stöckel; Nico Gerstner; Christina Backes; Eckart Meese; Andreas Keller; Marcel H. Schulz; Hans-Peter Lenhof (Nucleic Acids Res., 2017)

REGGAE: a novel approach for the identification of key transcriptional regulators. - Tim Kehl; Lara Schneider; Kathrin Kattler; Daniel Stöckel; Jenny Wegert; Nico Gerstner; Nicole Ludwig 001; Ute Distler; Markus Schick; Ulrich Keller; Stefan Tenzer; Manfred Gessler; et al. (Bioinform., 2018)

miRPathDB 2.0: a novel release of the miRNA Pathway Dictionary Database. - Tim Kehl; Fabian Kern; Christina Backes; Tobias Fehlmann; Daniel Stöckel; Eckart Meese; Hans-Peter Lenhof; Andreas Keller (Nucleic Acids Res., 2020)