Integrating Biomolecular Analysis and Visual Programming: Flexibility and Interactivity in the Design of Bioinformatics Tools. - Daniel Stoffler; Sophie I. Coon; Ruth Huey; Arthur J. Olson; Michel F. Sanner (HICSS, 2003)

Computer-linked autofabricated 3D models for teaching structural biology. - Alexandre Gillet; Suzanne Weghorst; William Winn; Daniel Stoffler; Michel F. Sanner; David S. Goodsell; Arthur J. Olson (SIGGRAPH Sketches, 2004)

Augmented Reality with Tangible Auto-Fabricated Models for Molecular Biology Applications. - Alexandre Gillet; Michel F. Sanner; Daniel Stoffler; David S. Goodsell; Arthur J. Olson (IEEE Visualization, 2004)

Tangible Augmented Interfaces for Structural Molecular Biology. - Alexandre Gillet; Michel F. Sanner; Daniel Stoffler; Arthur J. Olson (IEEE Computer Graphics and Applications, 2005)

Hierarchical and multi-resolution representation of protein flexibility. - Yong Zhao; Daniel Stoffler; Michel F. Sanner (Bioinform., 2006)

Cross-project HTS-datamining. - Wolfgang Guba; Daniel Stoffler (J. Cheminformatics, 2011)

Putting the available chemical space to the fingertips of our scientists. - Jörg Degen; Mark Rogers-Evans; Daniel Stoffler (J. Cheminformatics, 2012)

SAR Analyzer: a tool for interactive SAR data visualization and navigation. - Lisa Peltason; Daniel Stoffler (J. Cheminformatics, 2012)