Root demotion: efficient post-processing of layered graphs to reduce dummy vertices for hierarchical graph drawing. - Daniel Sumner Magruder; Stefan Bonn (J. Graph Algorithms Appl., 2017)

Oasis 2: improved online analysis of small RNA-seq data. - Raza-Ur Rahman; Abhivyakti Gautam; Jörn Bethune; Abdul Sattar 004; Maksims Fiosins; Daniel Sumner Magruder; Vincenzo Capece; Orr Shomroni; Stefan Bonn (BMC Bioinform., 2018)

SEAweb: the small RNA Expression Atlas web application. - Raza-Ur Rahman; Anna-Maria Liebhoff; Vikas Bansal; Maksims Fiosins; Ashish Rajput; Abdul Sattar 004; Daniel Sumner Magruder; Sumit Madan; Ting Sun; Abhivyakti Gautam; Sven Heins; Timur Liwinski; et al. (Nucleic Acids Res., 2020)

Interactive gene networks with KNIT. - Daniel Sumner Magruder; Anna-Maria Liebhoff; Jörn Bethune; Stefan Bonn (Bioinform., 2021)

Manifold Interpolating Optimal-Transport Flows for Trajectory Inference. - Guillaume Huguet; Daniel Sumner Magruder; Alexander Tong 001; Oluwadamilola Fasina; Manik Kuchroo; Guy Wolf; Smita Krishnaswamy (NeurIPS, 2022)

A Conservative Metric of Power Creep. - Daniel Sumner Magruder (Games Cult., 2022)

Inferring Dynamic Regulatory Interaction Graphs From Time Series Data With Perturbations. - Dhananjay Bhaskar; Daniel Sumner Magruder; Matheo Morales; Edward De Brouwer; Aarthi Venkat; Frederik Wenkel; Guy Wolf; Smita Krishnaswamy (LoG, 2023)

Inferring dynamic regulatory interaction graphs from time series data with perturbations. - Dhananjay Bhaskar; Daniel Sumner Magruder; Edward De Brouwer; Aarthi Venkat; Frederik Wenkel; Guy Wolf; Smita Krishnaswamy (CoRR, 2023)