MSA-GPU: Exact Multiple Sequence Alignment Using GPU. - Daniel Sundfeld; Alba Cristina Magalhaes Alves de Melo (BSB, 2013)

Parallel A-Star Multiple Sequence Alignment with Locality-Sensitive Hash Functions. - Daniel Sundfeld; George Teodoro; Alba Cristina Magalhaes Alves de Melo (CISIS, 2015)

Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment. - Daniel Sundfeld; Jakob Hull Havgaard; Alba Cristina Magalhaes Alves de Melo; Jan Gorodkin (Bioinform., 2016)

CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment. - Daniel Sundfeld; Jakob Hull Havgaard; Jan Gorodkin; Alba Cristina Magalhaes Alves de Melo (PDP, 2017)

Alinhamento primário e secundário de sequências biológicas em arquiteturas de alto desempenho - Daniel Sundfeld (2017)

PA-Star: A disk-assisted parallel A-Star strategy with locality-sensitive hash for multiple sequence alignment. - Daniel Sundfeld; Caina Razzolini; George Teodoro; Azzedine Boukerche; Alba Cristina Magalhaes Alves de Melo (J. Parallel Distributed Comput., 2018)

Using GPU to accelerate the pairwise structural RNA alignment with base pair probabilities. - Daniel Sundfeld; George Teodoro; Jakob Hull Havgaard; Jan Gorodkin; Alba C. M. A. Melo (Concurr. Comput. Pract. Exp., 2020)

PA-Star2: Fast Optimal Multiple Sequence Alignment for Asymmetric Multicore Processors. - Daniel Sundfeld; George Teodoro; Alba C. M. A. Melo (PDP, 2025)