GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomics. - Daniel Tabas-Madrid; Rubén Nogales-Cadenas; Alberto D. Pascual-Montano (Nucleic Acids Res., 2012)

3DEM Loupe: analysis of macromolecular dynamics using structures from electron microscopy. - Rubén Nogales-Cadenas; Slavica Jonic; Florence Tama; A. A. Arteni; Daniel Tabas-Madrid; Miguel Vázquez; Alberto D. Pascual-Montano; Carlos Oscar Sánchez Sorzano (Nucleic Acids Res., 2013)

NMF-mGPU: non-negative matrix factorization on multi-GPU systems. - Edgardo Mejía-Roa; Daniel Tabas-Madrid; Javier Setoain; Carlos García 001; Francisco Tirado; Alberto D. Pascual-Montano (BMC Bioinform., 2015)

NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning. - Javier Setoain; Mònica Franch; Marta Martínez; Daniel Tabas-Madrid; Carlos Oscar Sánchez Sorzano; Annette Bakker; Eduardo Gonzalez-Couto; Juan Elvira; Alberto D. Pascual-Montano (Nucleic Acids Res., 2015)

Breaking-Cas - interactive design of guide RNAs for CRISPR-Cas experiments for ENSEMBL genomes. - Juan C. Oliveros; Mònica Franch; Daniel Tabas-Madrid; David San-León; Lluis Montoliu; Pilar Cubas; Florencio Pazos (Nucleic Acids Res., 2016)

3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures. - Joan Segura; Rubén Sánchez García; Marta Martínez; Jesús Cuenca Alba; Daniel Tabas-Madrid; Carlos Oscar Sánchez Sorzano; José María Carazo (Bioinform., 2017)