Comparison of discrete- and continuous-state stochastic methods to model neuronal signal transduction. - Tiina Manninen; Daniel X. Keller (BCB, 2010)

An Exclusion Zone for Ca2+ Channels around Docked Vesicles Explains Release Control by Multiple Channels at a CNS Synapse. - Daniel X. Keller; Norbert Babai; Olexiy Kochubey; Yunyun Han; Henry Markram; Felix Schürmann; Ralf Schneggenburger (PLoS Comput. Biol., 2015)

Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue. - Geir Halnes; Tuomo Mäki-Marttunen; Daniel X. Keller; Klas H. Pettersen; Ole A. Andreassen; Gaute T. Einevoll (PLoS Comput. Biol., 2016)

A Cell Atlas for the Mouse Brain. - Csaba Erö; Marc-Oliver Gewaltig; Daniel X. Keller; Henry Markram (Frontiers Neuroinformatics, 2018)

Corrigendum: A Cell Atlas for the Mouse Brain. - Csaba Erö; Marc-Oliver Gewaltig; Daniel X. Keller; Henry Markram (Frontiers Neuroinformatics, 2019)

Interactive visualization and analysis of morphological skeletons of brain vasculature networks with VessMorphoVis. - Marwan Abdellah; Nadir Román Guerrero; Samuel Lapere; Jay S. Coggan; Daniel X. Keller; Benoit Coste; Snigdha Dagar; Jean-Denis Courcol; Henry Markram; Felix Schürmann (Bioinform., 2020)

Metaball skinning of synthetic astroglial morphologies into realistic mesh models for in silico simulations and visual analytics. - Marwan Abdellah; Alessandro Foni; Eleftherios Zisis; Nadir Román Guerrero; Samuel Lapere; Jay S. Coggan; Daniel X. Keller; Henry Markram; Felix Schürmann (Bioinform., 2021)

Supervised Learning With Perceptual Similarity for Multimodal Gene Expression Registration of a Mouse Brain Atlas. - Jan Krepl; Francesco Casalegno; Emilie Delattre; Csaba Erö; Huanxiang Lu; Daniel X. Keller; Dimitri Rodarie; Henry Markram; Felix Schürmann (Frontiers Neuroinformatics, 2021)

A Modular Workflow for Model Building, Analysis, and Parameter Estimation in Systems Biology and Neuroscience. - João P. G. Santos; Kadri Pajo; Daniel Trpevski; Andrey Stepaniuk; Olivia Eriksson; Anu G. Nair; Daniel X. Keller; Jeanette Hellgren Kotaleski; Andrei Kramer (Neuroinformatics, 2022)

A method to estimate the cellular composition of the mouse brain from heterogeneous datasets. - Dimitri Rodarie; Csaba Verasztó; Yann Roussel; Michael W. Reimann; Daniel X. Keller; Srikanth Ramaswamy; Henry Markram; Marc-Oliver Gewaltig (PLoS Comput. Biol., 2022)

Ultraliser: a framework for creating multiscale, high-fidelity and geometrically realistic 3D models for in silico neuroscience. - Marwan Abdellah; Juan Jose Garcia-Cantero; Nadir Román Guerrero; Alessandro Foni; Jay S. Coggan; Corrado Calì; Marco Agus; Eleftherios Zisis; Daniel X. Keller; Markus Hadwiger; Pierre J. Magistretti; Henry Markram; et al. (Briefings Bioinform., 2023)

Mapping of morpho-electric features to molecular identity of cortical inhibitory neurons. - Yann Roussel; Csaba Verasztó; Dimitri Rodarie; Tanguy Damart; Michael W. Reimann; Srikanth Ramaswamy; Henry Markram; Daniel X. Keller (PLoS Comput. Biol., 2023)

Synthesis of geometrically realistic and watertight neuronal ultrastructure manifolds for in silico modeling. - Marwan Abdellah; Alessandro Foni; Juan Jose Garcia-Cantero; Nadir Román Guerrero; Elvis Boci; Adrien Fleury; Jay S. Coggan; Daniel X. Keller; Judit Planas; Jean-Denis Courcol; Georges Khazen (Briefings Bioinform., 2024)

Seizure and redox rescue in a model of glucose transport deficiency. - Jay S. Coggan; Polina Shichkova; Henry Markram; Daniel X. Keller (PLoS Comput. Biol., 2025)