Transcriptator: Computational Pipeline to Annotate Transcripts and Assembled Reads from RNA-Seq Data. - Kumar Parijat Tripathi; Daniela Evangelista; Raffaele Cassandra; Mario R. Guarracino (CIBB, 2014)

AnaLysis of Expression on human chromosome 21, ALE-HSA21: a pilot integrated web resource. - Margherita Scarpato; Roberta Esposito; Daniela Evangelista; Marianna Aprile; Maria Rosaria Ambrosio; Claudia Angelini; Alfredo Ciccodicola; Valerio Costa (Database J. Biol. Databases Curation, 2014)

A Web Resource on Skeletal Muscle Transcriptome of Primates. - Daniela Evangelista; Mariano Avino; Kumar Parijat Tripathi; Mario Rosario Guarracino (CIBB, 2015)

HvDBase: A Web Resource on Hydra Vulgaris Transcriptome. - Daniela Evangelista; Kumar Parijat Tripathi; Valentina Scuotto; Mario Rosario Guarracino (IWBBIO (2), 2015)

An Atlas of annotations of Hydra vulgaris transcriptome. - Daniela Evangelista; Kumar Parijat Tripathi; Mario Rosario Guarracino (BMC Bioinform., 2016)

A mixed integer programming-based global optimization framework for analyzing gene expression data. - Giovanni Felici; Kumar Parijat Tripathi; Daniela Evangelista; Mario Rosario Guarracino (J. Glob. Optim., 2017)