Intermediate Representation in Model Based Recognition Using Straight Line and Ellipsoidal Arc Primitives. - Sergiu Nedevschi; Tiberiu Marita; Daniela Puiu (ICIAP, 2001)

Self-Adapting Backfilling Scheduling for Parallel Systems. - Barry G. Lawson; Evgenia Smirni; Daniela Puiu (ICPP, 2002)

SUPERCONTIGS: A Contig Scaffolding Tool. - Daniela Puiu (CSB, 2004)

CryptoDB: the Cryptosporidium genome resource. - Daniela Puiu; Shinichiro Enomoto; Gregory A. Buck; Mitchell S. Abrahamsen; Jessica C. Kissinger (Nucleic Acids Res., 2004)

Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads. - Steven L. Salzberg; Daniel D. Sommer; Daniela Puiu; Vincent T. Lee (PLoS Comput. Biol., 2008)

Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies. - Michael C. Schatz; Adam M. Phillippy; Daniel D. Sommer; Arthur L. Delcher; Daniela Puiu; Giuseppe Narzisi; Steven L. Salzberg; Mihai Pop (Briefings Bioinform., 2013)

GAGE-B: an evaluation of genome assemblers for bacterial organisms. - Tanja Magoc; Stephan Pabinger; Stefan Canzar; Xinyue Liu; Qi Su; Daniela Puiu; Luke J. Tallon; Steven L. Salzberg (Bioinform., 2013)

The MaSuRCA genome assembler. - Aleksey V. Zimin; Guillaume Marçais; Daniela Puiu; Michael Roberts; Steven L. Salzberg; James A. Yorke (Bioinform., 2013)