A Local Decision Algorithm for Maximum Lifetime in ad Hoc Networks. - Andrea Clematis; Daniele D'Agostino; Vittoria Gianuzzi (Euro-Par, 2002)

A Web-Based Isosurface Extraction System for Heterogeneous Clients. - Andrea Clematis; Daniele D'Agostino; Walter De Marco; Vittoria Gianuzzi (EUROMICRO, 2003)

Parallel Decimation of 3D Meshes for Efficient Web-Based Isosurface Extraction. - Andrea Clematis; Daniele D'Agostino; Massimo Mancini; Vittoria Gianuzzi (PARCO, 2003)

Smart Data Caching in Archeological Wireless Applications: the PAST Solution. - Massimo Ancona; Walter Cazzola; Daniele D'Agostino (PDP, 2003)

An Online Parallel Algorithm for Remote Visualization of Isosurfaces. - Andrea Clematis; Daniele D'Agostino; Vittoria Gianuzzi (PVM/MPI, 2003)

Evolutions in parallel distributed and network-based processing. - Andrea Clematis; Daniele D'Agostino (J. Syst. Archit., 2003)

Using a Structured Programming Environment for Parallel Remote Visualization. - Pierluigi Ammirati; Andrea Clematis; Daniele D'Agostino; Vittoria Gianuzzi (Euro-Par, 2004)

Using Parallel Isosurface Extraction in Superficial Molecular Modeling. - Ivan Merelli; Luciano Milanesi; Daniele D'Agostino; Andrea Clematis; Marco Vanneschi; Marco Danelutto (DFMA, 2005)

An Object Interface for Interoperability of Image Processing Parallel Library in a Distributed Environment. - Andrea Clematis; Daniele D'Agostino; Antonella Galizia (ICIAP, 2005)

A Parallel IMAGE Processing Server for Distributed Applications. - Andrea Clematis; Daniele D'Agostino; Antonella Galizia (PARCO, 2005)

Parallel Compression of 3D Meshes for Efficient Distributed Visualization. - Andrea Clematis; Daniele D'Agostino; Vittoria Gianuzzi (PARCO, 2005)

Using a CCA Compliant Framework for Parallel Remote Visualization. - Andrea Clematis; Daniele D'Agostino; Antonella Galizia; Massimiliano Moscati (PDP, 2005)

Load Balancing and Computing Strategies in Pipeline Optimization for Parallel Visualization of 3D Irregular Meshes. - Andrea Clematis; Daniele D'Agostino; Vittoria Gianuzzi (PVM/MPI, 2005)

High performance workflow implementation for protein surface characterization using grid technology. - Ivan Merelli; Giulia Morra; Daniele D'Agostino; Andrea Clematis; Luciano Milanesi (BMC Bioinform., 2005)

Resource Selection and Application Execution in a Grid: A Migration Experience from GT2 to GT4. - Andrea Clematis; Angelo Corana; Daniele D'Agostino; Vittoria Gianuzzi; Alessio Merlo (OTM Conferences (2), 2006)

Designing parallel programs for 3D data processing on distributed architectures. - Daniele D'Agostino (2006)

Tissue MicroArray: a Distributed Grid Approach for Image Analysis. - Federica Viti; Ivan Merelli; Antonella Galizia; Daniele D'Agostino; Andrea Clematis; Luciano Milanesi (HealthGrid, 2007)

Parallel I/O Aspects in PIMA(GE). - Andrea Clematis; Daniele D'Agostino; Antonella Galizia (PARCO, 2007)

A Parallel Workflow for the Reconstruction of Molecular Surfaces. - Daniele D'Agostino; Ivan Merelli; Andrea Clematis; Luciano Milanesi; Alessandro Orro (PARCO, 2007)

Experimenting Grid Protocols to Improve Privacy Preservation in Efficient Distributed Image Processing. - Antonella Galizia; Federica Viti; Daniele D'Agostino; Ivan Merelli; Luciano Milanesi; Andrea Clematis (PARCO, 2007)

Images Based System for Surface Matching in Macromolecular Screening. - Ivan Merelli; Paolo Cozzi; Daniele D'Agostino; Andrea Clematis; Luciano Milanesi (BIBM, 2008)

TMAinspect, an EGEE Framework for Tissue MicroArray Image Handling. - Antonella Galizia; Federica Viti; Alessandro Orro; Daniele D'Agostino; Ivan Merelli; Luciano Milanesi; Andrea Clematis (CCGRID, 2008)

A Distributed Approach for Structured Resource Discovery on Grid. - Andrea Clematis; Daniele D'Agostino; Alfonso Quarati; Angelo Corana; Vittoria Gianuzzi; Alessio Merlo (CISIS, 2008)

Enabling Parallel TMA Image Analysis in a Grid Environment. - Antonella Galizia; Daniele D'Agostino; Andrea Clematis; Federica Viti; Alessandro Orro; Ivan Merelli; Luciano Milanesi (CISIS, 2008)

Managing Networks of Mobiles Entities Using the HyVonNe P2P Architecture. - Vittoria Gianuzzi; Alessio Merlo; Andrea Clematis; Daniele D'Agostino (CISIS, 2008)

A Grid Service based Parallel Molecular Surface Reconstruction System. - Daniele D'Agostino; Andrea Clematis; Ivan Merelli; Luciano Milanesi; Matteo Coloberti (PDP, 2008)

A parallel protein surface reconstruction system. - Ivan Merelli; Alessandro Orro; Daniele D'Agostino; Andrea Clematis; Luciano Milanesi (Int. J. Bioinform. Res. Appl., 2008)

A Performance-Based Methodology to Improve Grid Exploitation. - Andrea Clematis; Angelo Corana; Daniele D'Agostino; Antonella Galizia; Alfonso Quarati (DSOM, 2009)

Parallel Decomposition of 3D Surfaces in Images of Local Descriptors for Molecular Screening. - Daniele D'Agostino; Andrea Clematis; Ivan Merelli; Paolo Cozzi; Luciano Milanesi (PDP, 2009)

Performance Based Matchmaking on Grid. - Andrea Clematis; Angelo Corana; Daniele D'Agostino; Antonella Galizia; Alfonso Quarati (PPAM (2), 2009)

A Grid framework to enable parallel and concurrent TMA image analyses. - Antonella Galizia; Daniele D'Agostino; Andrea Clematis (Int. J. Grid Util. Comput., 2009)

Efficient management of resources and entities using the HyVonNe P2P architecture. - Vittoria Gianuzzi; Daniele D'Agostino; Alessio Merlo; Andrea Clematis (Int. J. Grid Util. Comput., 2009)

A Parallel Algorithm for Molecular Surface Matching Through Image Representation. - Daniele D'Agostino; Andrea Clematis; Ivan Merelli; Paolo Cozzi; Luciano Milanesi (PDP, 2010)

Job-resource matchmaking on Grid through two-level benchmarking. - Andrea Clematis; Angelo Corana; Daniele D'Agostino; Antonella Galizia; Alfonso Quarati (Future Gener. Comput. Syst., 2010)

Matching Jobs with Resources: an application-driven approach. - Andrea Clematis; Angelo Corana; Daniele D'Agostino; Antonella Galizia; Alfonso Quarati (Scalable Comput. Pract. Exp., 2010)

Parallelization of the SSAKE Genomics Application. - Daniele D'Agostino; Ivan Merelli; René L. Warren; Alessandro Guffanti; Luciano Milanesi; Andrea Clematis (PDP, 2011)

CUDA Accelerated Blobby Molecular Surface Generation. - Daniele D'Agostino; Sergio Decherchi; Antonella Galizia; José Colmenares; Alfonso Quarati; Walter Rocchia; Andrea Clematis (PPAM (1), 2011)

Towards a Grid Infrastructure for hydro-Meteorological Research. - Michael Schiffers; Dieter Kranzlmüller; Andrea Clematis; Daniele D'Agostino; Antonella Galizia; Alfonso Quarati; Antonio Parodi; Marina Morando; Nicola Rebora; Eva Trasforini; Luca Molini; Franco Siccardi; et al. (Comput. Sci., 2011)

Parallel isosurface extraction for 3D data analysis workflows in distributed environments. - Daniele D'Agostino; Andrea Clematis; Vittoria Gianuzzi (Concurr. Comput. Pract. Exp., 2011)

Image-Based Surface Matching Algorithm Oriented to Structural Biology. - Ivan Merelli; Paolo Cozzi; Daniele D'Agostino; Andrea Clematis; Luciano Milanesi (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Delivering Cloud Services with QoS Requirements: An Opportunity for ICT SMEs. - Alfonso Quarati; Daniele D'Agostino; Antonella Galizia; Matteo Mangini; Andrea Clematis (GECON, 2012)

Efficiency-Aware Jobs Allocation for e-Science Environments. - Andrea Clematis; Daniele D'Agostino; Antonella Galizia; Alfonso Quarati (PDP, 2012)

A CUDA-based Implementation of the SSAKE Genomics Application. - Daniele D'Agostino; Andrea Clematis; Alessandro Guffanti; Luciano Milanesi; Ivan Merelli (PDP, 2012)

DRIHM: Distributed Research Infrastructure for Hydro-Meteorology. - Andrea Clematis; Daniele D'Agostino; Emanuele Danovaro; Antonella Galizia; Alfonso Quarati; Antonio Parodi; Nicola Rebora; Tatiana Bedrina; Dieter Kranzlmüller; Michael Schiffers; Bert Jagers; Quillon K. Harpham; et al. (SoSE, 2012)

A Parallel Implementation of the Stau-DPP Stochastic Simulator for the Modelling of Biological Systems. - Ettore Mosca; Ivan Merelli; Luciano Milanesi; Andrea Clematis; Daniele D'Agostino (PDP, 2013)

A QoS-aware broker for hybrid clouds. - Daniele D'Agostino; Antonella Galizia; Andrea Clematis; Matteo Mangini; Ivan Porro; Alfonso Quarati (Computing, 2013)

Hybrid Clouds brokering: Business opportunities, QoS and energy-saving issues. - Alfonso Quarati; Andrea Clematis; Antonella Galizia; Daniele D'Agostino (Simul. Model. Pract. Theory, 2013)

WS-PGRADE/gUSE in European Projects. - Tamás Kiss; Péter Kacsuk; Róbert Lovas; Ákos Balaskó; Alessandro Spinuso; Malcolm P. Atkinson 001; Daniele D'Agostino; Emanuele Danovaro; Michael Schiffers (Science Gateways for Distributed Computing Infrastructures, 2014)

A Fine-Grained CUDA Implementation of the Multi-objective Evolutionary Approach NSGA-II: Potential Impact for Computational and Systems Biology Applications. - Daniele D'Agostino; Giulia Pasquale; Ivan Merelli (CIBB, 2014)

Setting Up an Hydro-Meteo Experiment in Minutes: The DRIHM e-Infrastructure for HM Research. - Emanuele Danovaro; Luca Roverelli; Gabriele Zereik; Antonella Galizia; Daniele D'Agostino; Giacomo Paschina; Alfonso Quarati; Andrea Clematis; Fabio Delogu; Elisabetta Fiori; Antonio Parodi; Christian Straube; et al. (eScience, 2014)

A CUDA Implementation of the Spatial TAU-Leaping in Crowded Compartments (STAUCC) Simulator. - Giulia Pasquale; Carlo Maj; Andrea Clematis; Ettore Mosca; Luciano Milanesi; Ivan Merelli; Daniele D'Agostino (PDP, 2014)

The WNoDeS Cloud Virtualization Framework: A Macromolecular Surface Analysis Application Case Study. - Elisabetta Ronchieri; Daniele Cesini; Daniele D'Agostino; Vincenzo Ciaschini; Gianni Dalla Torre; Paolo Cozzi; Davide Salomoni; Andrea Clematis; Luciano Milanesi; Ivan Merelli (PDP, 2014)

The DRIHM Project: A Flexible Approach to Integrate HPC, Grid and Cloud Resources for Hydro-Meteorological Research. - Daniele D'Agostino; Andrea Clematis; Antonella Galizia; Alfonso Quarati; Emanuele Danovaro; Luca Roverelli; Gabriele Zereik; Dieter Kranzlmüller; Michael Schiffers; Nils gentschen Felde; Christian Straube; Olivier Caumont; et al. (SC, 2014)

CUDA accelerated molecular surface generation. - Daniele D'Agostino; Andrea Clematis; Sergio Decherchi; Walter Rocchia; Luciano Milanesi; Ivan Merelli (Concurr. Comput. Pract. Exp., 2014)

Latest advances in distributed, parallel, and graphic processing unit accelerated approaches to computational biology. - Ivan Merelli; Horacio Emilio Pérez Sánchez; Sandra Gesing; Daniele D'Agostino (Concurr. Comput. Pract. Exp., 2014)

Profiling e-Science infrastructures with kernel and application benchmarks. - Andrea Clematis; Daniele D'Agostino; Antonella Galizia; Alfonso Quarati (Int. J. Grid Util. Comput., 2014)

Heterogeneous architectures for computational intensive applications: A cost-effectiveness analysis. - Emanuele Danovaro; Andrea Clematis; Antonella Galizia; Giuseppe Ripepi; Alfonso Quarati; Daniele D'Agostino (J. Comput. Appl. Math., 2014)

Clustering Protein Structures with Hadoop. - Giacomo Paschina; Luca Roverelli; Daniele D'Agostino; Federica Chiappori; Ivan Merelli (CIBB, 2015)

A Hybrid Parallel Implementation of Model Selection for Support Vector Machines. - Giuseppe Ripepi; Andrea Clematis; Daniele D'Agostino (PDP, 2015)

A parallel isosurface extraction component for visualization pipelines executing on GPU clusters. - Daniele D'Agostino; Frank J. Seinstra (J. Comput. Appl. Math., 2015)

An MPI-CUDA library for image processing on HPC architectures. - Antonella Galizia; Daniele D'Agostino; Andrea Clematis (J. Comput. Appl. Math., 2015)

Scheduling strategies for enabling meteorological simulation on hybrid clouds. - Alfonso Quarati; Emanuele Danovaro; Antonella Galizia; Andrea Clematis; Daniele D'Agostino; Antonio Parodi (J. Comput. Appl. Math., 2015)

MicroRNA-Target Interaction: A Parallel Approach for Computing Pairing Energy. - Elisabetta Ronchieri; Daniele D'Agostino; Luciano Milanesi; Ivan Merelli (PDP, 2016)

Lessons learned implementing a science gateway for hydro-meteorological research. - Daniele D'Agostino; Emanuele Danovaro; Andrea Clematis; Luca Roverelli; Gabriele Zereik; Antonio Parodi; Antonella Galizia (Concurr. Comput. Pract. Exp., 2016)

Delivering cloud services with QoS requirements: Business opportunities, architectural solutions and energy-saving aspects. - Alfonso Quarati; Andrea Clematis; Daniele D'Agostino (Future Gener. Comput. Syst., 2016)

From Lesson Learned to the Refactoring of the DRIHM Science Gateway for Hydro-meteorological Research. - Daniele D'Agostino; Emanuele Danovaro; Andrea Clematis; Luca Roverelli; Gabriele Zereik; Antonella Galizia (J. Grid Comput., 2016)

Performance and Economic Evaluations in Adopting Low Power Architectures: A Real Case Analysis. - Daniele D'Agostino; Daniele Cesini; Elena Corni; Andrea Ferraro; Lucia Morganti; Alfonso Quarati; Ivan Merelli (GECON, 2017)

Integrating Heterogeneous Weather-Sensors Data into a Smart-City App. - Alfonso Quarati; Andrea Clematis; Luca Roverelli; Gabriele Zereik; Daniele D'Agostino; Giovanni Mosca; Michele Masnata (HPCS, 2017)

MOEA-Based Brokering for Hybrid Clouds. - Alfonso Quarati; Daniele D'Agostino (HPCS, 2017)

Low-Power Architectures for miRNA-Target Genome Wide Analysis. - Stefano Beretta 001; Lucia Morganti; Elena Corni; Andrea Ferraro; Daniele Cesini; Daniele D'Agostino; Luciano Milanesi; Ivan Merelli (PDP, 2017)

Implementing a Space-Aware Stochastic Simulator on Low-Power Architectures: A Systems Biology Case Study. - Lucia Morganti; Elena Corni; Andrea Ferraro; Daniele Cesini; Daniele D'Agostino; Ivan Merelli (PDP, 2017)

A stakeholder consultation into hydro-meteorological e-science environments. - Quillon K. Harpham; Olalla Gimeno; Antonio Parodi; Daniele D'Agostino (Earth Sci. Informatics, 2017)

Porting bioinformatics applications from grid to cloud: A macromolecular surface analysis application case study. - Ivan Merelli; Paolo Cozzi; Elisabetta Ronchieri; Daniele Cesini; Daniele D'Agostino (Int. J. High Perform. Comput. Appl., 2017)

A microservice-based portal for X-ray transient and variable sources. - Daniele D'Agostino; Luca Roverelli; Gabriele Zereik; Andrea De Luca; Ruben Salvaterra; Andrea Belfiore; Gianni Lisini; Giovanni Novara; Andrea Tiengo (PeerJ Prepr., 2017)

Computing Empirical P-Values for Estimating Gene-Gene Interactions in Genome-Wide Association Studies: A Parallel Computing Approach. - Valentina Giansanti; Daniele D'Agostino; Carlo Maj; Stefano Beretta 001; Ivan Merelli (PDP, 2018)

Low-Power Storage Bricks and Bioinformatics on Systems-On-Chip. - Lucia Morganti; Daniele Cesini; Elena Corni; Luca Lama; Carmelo Pellegrino; Ivan Merelli; Daniele D'Agostino (PDP, 2018)

Low-power portable devices for metagenomics analysis: Fog computing makes bioinformatics ready for the Internet of Things. - Ivan Merelli; Lucia Morganti; Elena Corni; Carmelo Pellegrino; Daniele Cesini; Luca Roverelli; Gabriele Zereik; Daniele D'Agostino (Future Gener. Comput. Syst., 2018)

NeoHiC: A Web Application for the Analysis of Hi-C Data. - Daniele D'Agostino; Pietro Liò; Marco Aldinucci; Ivan Merelli (CIBB, 2019)

Parallel Computing in Deep Learning: Bioinformatics Case Studiesa. - Valentina Giansanti; Stefano Beretta 001; Daniele Cesini; Daniele D'Agostino; Ivan Merelli (PDP, 2019)

Combining Edge and Cloud computing for low-power, cost-effective metagenomics analysis. - Daniele D'Agostino; Lucia Morganti; Elena Corni; Daniele Cesini; Ivan Merelli (Future Gener. Comput. Syst., 2019)

SoC-based computing infrastructures for scientific applications and commercial services: Performance and economic evaluations. - Daniele D'Agostino; Alfonso Quarati; Andrea Clematis; Lucia Morganti; Elena Corni; Valentina Giansanti; Daniele Cesini; Ivan Merelli (Future Gener. Comput. Syst., 2019)

A science gateway for Exploring the X-ray Transient and variable sky using EGI Federated Cloud. - Daniele D'Agostino; Luca Roverelli; Gabriele Zereik; Giuseppe La Rocca; Andrea De Luca; Ruben Salvaterra; Andrea Belfiore; Gianni Lisini; Giovanni Novara; Andrea Tiengo (Future Gener. Comput. Syst., 2019)

Using Apache Airavata and EasyGateway for the creation of complex science gateway front-end. - Antonella Galizia; Luca Roverelli; Gabriele Zereik; Emanuele Danovaro; Andrea Clematis; Daniele D'Agostino (Future Gener. Comput. Syst., 2019)

Exploiting Docker containers over Grid computing for a comprehensive study of chromatin conformation in different cell types. - Ivan Merelli; Federico Fornari; Fabio Tordini; Daniele D'Agostino; Marco Aldinucci; Daniele Cesini (J. Parallel Distributed Comput., 2019)

Guest editorials: Special issue on fog/edge networking for multimedia applications. - Yong Jin; Hang Shen 001; Daniele D'Agostino; Nadjib Achir; James Nightingale (Peer-to-Peer Netw. Appl., 2019)

Json-GUI - A module for the dynamic generation of form-based web interfaces. - Antonella Galizia; Gabriele Zereik; Luca Roverelli; Emanuele Danovaro; Andrea Clematis; Daniele D'Agostino (SoftwareX, 2019)

Latest advances in parallel, distributed, and network-based processing. - Ivan Merelli; Pietro Liò; Igor V. Kotenko; Daniele D'Agostino (Concurr. Comput. Pract. Exp., 2020)

On low-power SoCs as storage bricks for Bioinformatics. - Lucia Morganti; Elena Corni; Luca Lama; Carmelo Pellegrino; Francieli Zanon Boito; Ivan Merelli; Daniele D'Agostino; Daniele Cesini (Concurr. Comput. Pract. Exp., 2020)

A citizen science exploration of the X-ray transient sky using the EXTraS science gateway. - Daniele D'Agostino; Duncan Law-Green; Mike Watson; Giovanni Novara; Andrea Tiengo; Stefano Sandrelli; Andrea Belfiore; Ruben Salvaterra; Andrea De Luca (Future Gener. Comput. Syst., 2020)

A secure cloud-edges computing architecture for metagenomics analysis. - Luca Verderame; Ivan Merelli; Lucia Morganti; Elena Corni; Daniele Cesini; Daniele D'Agostino; Alessio Merlo (Future Gener. Comput. Syst., 2020)

Special issue on multimedia fog/edge computing systems. - Yong Jin; Daniele D'Agostino; Nadjib Achir; James Nightingale; Jiacun Wang (Multim. Syst., 2020)

Advantages of using graph databases to explore chromatin conformation capture experiments. - Daniele D'Agostino; Pietro Liò; Marco Aldinucci; Ivan Merelli (BMC Bioinform., 2021)

Editorial: Heterogeneous Computing for AI and Big Data in High Energy Physics. - Daniele D'Agostino; Daniele Cesini (Frontiers Big Data, 2021)

Hardware and Software Solutions for Energy-Efficient Computing in Scientific Programming. - Daniele D'Agostino; Ivan Merelli; Marco Aldinucci; Daniele Cesini (Sci. Program., 2021)

Guest Editorial: Special Section on New Trends in Parallel and Distributed Computing for Human Sensible Applications. - Daniele D'Agostino; Francesco Leporati; Massimo Torquati; Jingling Xue (IEEE Trans. Emerg. Top. Comput., 2021)

InCliniGene enables high-throughput and comprehensive in vivo clonal tracking toward clinical genomics data integration. - Ivan Merelli; Stefano Beretta 001; Daniela Cesana; Alessandro Gennari; Fabrizio Benedicenti; Giulio Spinozzi; Daniele Cesini; Eugenio Montini; Daniele D'Agostino; Andrea Calabria (Database J. Biol. Databases Curation, 2023)

Automatic Passenger Counting on the Edge via Unsupervised Clustering. - Giorgio Delzanno; Luca Caputo; Daniele D'Agostino; Daniele Grosso; Abdul Hannan Mustajab; Luca Bixio; Matteo Rulli (Sensors, 2023)

Automated species classification and counting by deep-sea mobile crawler platforms using YOLO. - Luciano Ortenzi; Jacopo Aguzzi; Corrado Costa; Simone Marini; Daniele D'Agostino; Laurenz Thomsen; Fabio C. De Leo; Paulo V. Correa; Damianos Chatzievangelou (Ecol. Informatics, 2024)

Geant4: A game changer in high energy physics and related applicative fields. - Tullio Basaglia; Zane W. Bell; Daniele D'Agostino; Paul V. Dressendorfer; Simone Giani; Maria Grazia Pia; Paolo Saracco (Future Gener. Comput. Syst., 2024)

Underwater Mediterranean image analysis based on the compute continuum paradigm. - Michele Ferrari; Daniele D'Agostino; Jacopo Aguzzi; Simone Marini (Future Gener. Comput. Syst., 2025)