A systems-level model reveals that 1, 2-Propanediol utilization microcompartments enhance pathway flux through intermediate sequestration. - Christopher M. Jakobson; Danielle Tullman-Ercek; Marilyn F. Slininger; Niall M. Mangan (PLoS Comput. Biol., 2017)

Density-based binning of gene clusters to infer function or evolutionary history using GeneGrouper. - Alexander G. McFarland; Nolan W. Kennedy; Carolyn E. Mills; Danielle Tullman-Ercek; Curtis Huttenhower; Erica M. Hartmann (Bioinform., 2022)