Distributed scheduling algorithms to improve the performance of parallel data transfers. - Dannie Durand; Ravi Jain; David Tseytlin (SIGARCH Comput. Archit. News, 1994)

Applying Randomized Edge Coloring Algorithms to Distributed Communication: An Experimental Study. - Dannie Durand; Ravi Jain; David Tseytlin (SPAA, 1995)

Improving the Performance of Parallel I/O Using Distributed Scheduling Algorithms. - Dannie Durand; Ravi Jain; David Tseytlin (Input/Output in Parallel and Distributed Computer Systems, 1996)

Impact of Memory Contention on Dynamic Scheduling on NUMA Multiprocessors. - Dannie Durand; Thierry Montaut; Lionel Kervella; William Jalby (IEEE Trans. Parallel Distributed Syst., 1996)

A new look at tree models for multiple sequence alignment. - Dannie Durand (Mathematical Support for Molecular Biology, 1998)

Notung: dating gene duplications using gene family trees. - Kevin C. Chen; Dannie Durand; Martin Farach-Colton (RECOMB, 2000)

NOTUNG: A Program for Dating Gene Duplications and Optimizing Gene Family Trees. - Kevin C. Chen; Dannie Durand; Martin Farach-Colton (J. Comput. Biol., 2000)

Tests for Gene Clustering. - Dannie Durand; David Sankoff (J. Comput. Biol., 2003)

Parallel I/O scheduling using randomized, distributed edge coloring algorithms. - Dannie Durand; Ravi Jain; David Tseytlin (J. Parallel Distributed Comput., 2003)

The Statistical Significance of Max-Gap Clusters. - Rose Hoberman; David Sankoff; Dannie Durand (Comparative Genomics, 2004)

The Incompatible Desiderata of Gene Cluster Properties. - Rose Hoberman; Dannie Durand (Comparative Genomics, 2005)

Individual Gene Cluster Statistics in Noisy Maps. - Narayanan Raghupathy; Dannie Durand (Comparative Genomics, 2005)

The Statistical Analysis of Spatially Clustered Genes under the Maximum Gap Criterion. - Rose Hoberman; David Sankoff; Dannie Durand (J. Comput. Biol., 2005)

Domain Architecture in Homolog Identification. - Nan Song; R. D. Sedgewick; Dannie Durand (Comparative Genomics, 2006)

A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction. - Dannie Durand; Bjarni V. Halldórsson; Benjamin Vernot (J. Comput. Biol., 2006)

Graph Theoretical Insights into Evolution of Multidomain Proteins. - Teresa M. Przytycka; George B. Davis; Nan Song; Dannie Durand (J. Comput. Biol., 2006)

Domain Architecture Comparison for Multidomain Homology Identification. - Nan Song; R. D. Sedgewick; Dannie Durand (J. Comput. Biol., 2007)

Two Plus Two Does not Equal Three: Statistical Tests for Multiple genome Comparison. - Narayanan Raghupathy; Rose Hoberman; Dannie Durand (J. Bioinform. Comput. Biol., 2008)

Preface. - Glenn Tesler; Dannie Durand (J. Comput. Biol., 2008)

Reconciliation with Non-Binary Species Trees. - Benjamin Vernot; Maureen Stolzer; Aiton Goldman; Dannie Durand (J. Comput. Biol., 2008)

Sequence Similarity Network Reveals Common Ancestry of Multidomain Proteins. - Nan Song; Jacob M. Joseph; George B. Davis; Dannie Durand (PLoS Comput. Biol., 2008)

Family classification without domain chaining. - Jacob M. Joseph; Dannie Durand (Bioinform., 2009)

Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees. - Maureen Stolzer; Han Lai; Minli Xu; Deepa Sathaye; Benjamin Vernot; Dannie Durand (Bioinform., 2012)

Event inference in multidomain families with phylogenetic reconciliation. - Maureen Stolzer; Katherine Siewert; Han Lai; Minli Xu; Dannie Durand (BMC Bioinform., 2015)

Fast Heuristics for Resolving Weakly Supported Branches Using Duplication, Transfers, and Losses. - Han Lai; Maureen Stolzer; Dannie Durand (RECOMB-CG, 2017)

Xenolog classification. - Charlotte A. Darby; Maureen Stolzer; Patrick J. Ropp; Daniel Barker; Dannie Durand (Bioinform., 2017)

Evidence for exon shuffling is sensitive to model choice. - Xiaoyue Cui; Maureen Stolzer; Dannie Durand (J. Bioinform. Comput. Biol., 2021)

Simulating domain architecture evolution. - Xiaoyue Cui; Yifan Xue; Collin McCormack; Alejandro Garcés; Thomas W. Rachman; Yang Yi; Maureen Stolzer; Dannie Durand (Bioinform., 2022)