Exon level integration of proteomics and microarray data. - Danny A. Bitton; Michal J. Okoniewski; Yvonne Connolly; Crispin J. Miller (BMC Bioinform., 2008)

PepSeA: Peptide Sequence Alignment and Visualization Tools to Enable Lead Optimization. - Javier L. Baylon; Oleg Ursu; Anja Muzdalo; Anne Mai Wassermann; Gregory L. Adams; Martin Spale; Petr Mejzlík; Anna Gromek; Viktor Pisarenko; Dzianis Hancharyk; Esteban Jenkins; David Bednar; et al. (J. Chem. Inf. Model., 2022)

Matcher: An Open-Source Application for Translating Large Structure/Property Data Sets into Insights for Drug Design. - Andrew J. Hoover; Martin Spale; Brian Lahue; Danny A. Bitton (J. Chem. Inf. Model., 2023)

AnNoBrainer, An Automated Annotation of Mouse Brain Images using Deep Learning. - Roman Peter; Petr Hrobar; Josef Navratil; Martin Vagenknecht; Jindrich Soukup; Keiko Tsuji; Nestor X. Barrezueta; Anna C. Stoll; Renee C. Gentzel; Jonathan A. Sugam; Jacob Marcus; Danny A. Bitton (Neuroinformatics, 2024)