R/qtl: high-throughput multiple QTL mapping. - Danny Arends; Pjotr Prins; Ritsert C. Jansen; Karl W. Broman (Bioinform., 2010)

The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button. - Morris A. Swertz; Martijn Dijkstra; Tomasz Adamusiak; K. Joeri van der Velde; Alexandros Kanterakis; Erik T. Roos; Joris Lops; Gudmundur A. Thorisson; Danny Arends; George Byelas; Juha Muilu; Anthony J. Brookes; et al. (BMC Bioinform., 2010)

Bioinformatics tools and database resources for systems genetics analysis in mice - a short review and an evaluation of future needs. - Caroline Durrant; Morris A. Swertz; Rudi Alberts; Danny Arends; Steffen Möller; Richard Mott; Pjotr Prins; K. Joeri van der Velde; Ritsert C. Jansen; Klaus Schughart (Briefings Bioinform., 2012)

xQTL workbench: a scalable web environment for multi-level QTL analysis. - Danny Arends; K. Joeri van der Velde; Pjotr Prins; Karl W. Broman; Steffen Möller; Ritsert C. Jansen; Morris A. Swertz (Bioinform., 2012)

WormQTL - public archive and analysis web portal for natural variation data in Caenorhabditis spp. - L. Basten Snoek; K. Joeri van der Velde; Danny Arends; Yang Li 036; Antje Beyer; Mark Elvin; Jasmin Fisher; Alex Hajnal; Michael O. Hengartner; Gino B. Poulin; Miriam Rodriguez; Tobias Schmid; et al. (Nucleic Acids Res., 2013)

WormQTLHD - a web database for linking human disease to natural variation data in C. elegans. - K. Joeri van der Velde; Mark de Haan; Konrad Zych; Danny Arends; L. Basten Snoek; Jan E. Kammenga; Ritsert C. Jansen; Morris A. Swertz; Yang Li 036 (Nucleic Acids Res., 2014)

Pheno2Geno - High-throughput generation of genetic markers and maps from molecular phenotypes for crosses between inbred strains. - Konrad Zych; Yang Li 036; K. Joeri van der Velde; Ronny Joosen; Wilco Ligterink; Ritsert C. Jansen; Danny Arends (BMC Bioinform., 2015)

Correlation Trait Loci (CTL) mapping: phenotype network inference subject to genotype. - Danny Arends; Yang Li 036; Gudrun A. Brockmann; Ritsert C. Jansen; Robert W. Williams; Pjotr Prins (J. Open Source Softw., 2016)

GeneNetwork: framework for web-based genetics. - Zachary Sloan; Danny Arends; Karl W. Broman; Arthur Centeno; Nicholas A. Furlotte; Harm Nijveen; Lei Yan; Xiang Zhou; Robert W. Williams; Pjotr Prins (J. Open Source Softw., 2016)

netgwas: An R Package for Network-Based Genome Wide Association Studies. - Pariya Behrouzi; Danny Arends; Ernst C. Wit (R J., 2023)