Scope+: an open source generalizable architecture for single-cell RNA-seq atlases at sample and cell levels. - Danqing Yin; Yue Cao; Junyi Chen; Candice L. Y. Mak; Ken H. O. Yu; Jiaxuan Zhang; Jia Li; Yingxin Lin; Joshua W. K. Ho; Jean Y. H. Yang (Bioinform., 2025)

OTMODE: an optimal transport theory-based framework for identifying differential features in single-cell multi-omics data. - Huidong Su; Caicai Zhang; Frank Qingyun Wang; Chun Hing She; Xinxin Chen; Xiao Dang; Yao Lei; Ke Ni; Zewei Xiong; Danqing Yin; Xingtian Yang; Hong Feng; et al. (Bioinform., 2026)

LLM-Driven Discovery of High-Entropy Catalysts via Retrieval-Augmented Generation. - AI Scientists; Xinyi Lin; Danqing Yin; Ying Guo (CoRR, 2026)