PEGR: a management platform for ChIP-based next generation sequencing pipelines. - Danying Shao; Gretta Kellogg; Shaun Mahony; William K. M. Lai; B. Franklin Pugh (PEARC, 2020)

RiboA: a web application to identify ribosome A-site locations in ribosome profiling data. - Danying Shao; Nabeel Ahmed; Nishant Soni; Edward P. O'Brien (BMC Bioinform., 2021)