Reliable scaling of position weight matrices for binding strength comparisons between transcription factors. - Xiaoyan Ma; Daphne Ezer; Carmen Navarro; Boris Adryan (BMC Bioinform., 2015)

Determining Physical Mechanisms of Gene Expression Regulation from Single Cell Gene Expression Data. - Daphne Ezer; Victoria Moignard; Berthold Göttgens; Boris Adryan (PLoS Comput. Biol., 2016)

NITPicker: selecting time points for follow-up experiments. - Daphne Ezer; Joseph Keir (BMC Bioinform., 2019)

PAFway: pairwise associations between functional annotations in biological networks and pathways. - Mahiar Mahjoub; Daphne Ezer (Bioinform., 2020)

Reconstructing Genotypes in Private Genomic Databases from Genetic Risk Scores. - Brooks Paige; James Bell 001; Aurélien Bellet; Adrià Gascón; Daphne Ezer (J. Comput. Biol., 2021)