Expediting protein structural analysis with an efficient kernel density estimation algorithm. - Yen-Jen Oyang; Darby Tien-Hao Chang; Chien-Yu Chen 001; Shien-Ching Hwang (ISMSE, 2003)

An Efficient Mechanism for Prediction of Protein-Ligand Interactions Based on Analysis of Protein Tertiary Substructures. - Darby Tien-Hao Chang; Chien-Yu Chen 001; Yen-Jen Oyang; Hsueh-Fen Juan; Hsuan-Cheng Huang (BIBE, 2004)

ProteMiner-SSM: a web server for efficient analysis of similar protein tertiary substructures. - Darby Tien-Hao Chang; Chien-Yu Chen 001; Wen-Chin Chung; Yen-Jen Oyang; Hsueh-Fen Juan; Hsuan-Cheng Huang (Nucleic Acids Res., 2004)

Data classification with a relaxed model of variable kernel density estimation. - Yen-Jen Oyang; Yu-Yen Ou; Shien-Ching Hwang; Chien-Yu Chen 001; Darby Tien-Hao Chang (IJCNN, 2005)

MEDock: a web server for efficient prediction of ligand binding sites based on a novel optimization algorithm. - Darby Tien-Hao Chang; Yen-Jen Oyang; Jung-Hsin Lin (Nucleic Acids Res., 2005)

Protemot: prediction of protein binding sites with automatically extracted geometrical templates. - Darby Tien-Hao Chang; Yi-Zhong Weng; Jung-Hsin Lin; Ming-Jing Hwang; Yen-Jen Oyang (Nucleic Acids Res., 2006)

Prediction of Protein Secondary Structures with a Novel Kernel Density Estimator. - Yen-Jen Oyang; Darby Tien-Hao Chang; Yu-Yen Ou; Hao-Geng Hung; Chien-Yu Chen 001 (MLMTA, 2007)

Real value prediction of protein solvent accessibility using enhanced PSSM features. - Darby Tien-Hao Chang; Hsuan-Yu Huang; Yu-Tang Syu; Chih-Peng Wu (BMC Bioinform., 2008)

Using a kernel density estimation based classifier to predict species-specific microRNA precursors. - Darby Tien-Hao Chang; Chih-Ching Wang; Jian-Wei Chen (BMC Bioinform., 2008)

E1DS: catalytic site prediction based on 1D signatures of concurrent conservation. - Ting-Ying Chien; Darby Tien-Hao Chang; Chien-Yu Chen 001; Yi-Zhong Weng; Chen-Ming Hsu (Nucleic Acids Res., 2008)

Data classification with a generalized Gaussian components based density estimation algorithm. - Chih-Hung Hsieh; Darby Tien-Hao Chang; Yen-Jen Oyang (IJCNN, 2009)

seeMotif: exploring and visualizing sequence motifs in 3D structures. - Darby Tien-Hao Chang; Ting-Ying Chien; Chien-Yu Chen 001 (Nucleic Acids Res., 2009)

Predicting the protein-protein interactions using primary structures with predicted protein surface. - Darby Tien-Hao Chang; Yu-Tang Syu; Po-Chang Lin (BMC Bioinform., 2010)

Predicting microRNA precursors with a generalized Gaussian components based density estimation algorithm. - Chih-Hung Hsieh; Darby Tien-Hao Chang; Cheng-Hao Hsueh; Chi-Yeh Wu; Yen-Jen Oyang (BMC Bioinform., 2010)

Predicting protein-protein interactions in unbalanced data using the primary structure of proteins. - Chi-Yuan Yu; Lih-Ching Chou; Darby Tien-Hao Chang (BMC Bioinform., 2010)

On the Design of Optimization Algorithms for Prediction of Molecular Interactions. - Darby Tien-Hao Chang; Jung-Hsin Lin; Chih-Hung Hsieh; Yen-Jen Oyang (Int. J. Artif. Intell. Tools, 2010)

Studying disorder-to-order transitions from structural analysis. - Tien-Hao Chang; Chih-Yun Chiang; Fung-Wei Lin; Chen-Yu Fan (ICCABS, 2011)

A study on the flexibility of enzyme active sites. - Yi-Zhong Weng; Darby Tien-Hao Chang; Yu-Feng Huang; Chih-Wei Lin (BMC Bioinform., 2011)

YPA: an integrated repository of promoter features in Saccharomyces cerevisiae. - Darby Tien-Hao Chang; Cheng-Yi Huang; Chi-Yeh Wu; Wei-Sheng Wu (Nucleic Acids Res., 2011)

AutoBind: automatic extraction of protein-ligand-binding affinity data from biological literature. - Darby Tien-Hao Chang; Chao-Hsuan Ke; Jung-Hsin Lin; Jung-Hsien Chiang (Bioinform., 2012)

A study on promoter characteristics of head-to-head genes in Saccharomyces cerevisiae. - Darby Tien-Hao Chang; Chi-Yeh Wu; Chen-Yu Fan (BMC Genom., 2012)

AH-DB: collecting protein structure pairs before and after binding. - Darby Tien-Hao Chang; Tsung-Ju Yao; Chen-Yu Fan; Chih-Yun Chiang; Yi-Han Bai (Nucleic Acids Res., 2012)

DBD2BS: connecting a DNA-binding protein with its binding sites. - Ting-Ying Chien; Chih-Kang Lin; Chih-Wei Lin; Yi-Zhong Weng; Chien-Yu Chen 001; Darby Tien-Hao Chang (Nucleic Acids Res., 2012)

Predicting cis-regulatory modules by method integration. - Darby Tien-Hao Chang; Guan-Yu Shiu; You-Jie Sun (ICCA, 2014)

A regulatory similarity measure using the location information of transcription factor binding sites in Saccharomyces cerevisiae. - Wei-Sheng Wu; Ming-Liang Wei; Chia-Ming Yeh; Darby Tien-Hao Chang (BMC Syst. Biol., 2014)

Light-RCV: a lightweight read coverage viewer for next generation sequencing data. - Che-Wei Chang; Wen-Bin Lee; An Chen-Deng; Tsunglin Liu; Joseph T. Tseng; Darby Tien-Hao Chang (BMC Bioinform., 2015)

CCProf: exploring conformational change profile of proteins. - Che-Wei Chang; Chai-Wei Chou; Darby Tien-Hao Chang (Database J. Biol. Databases Curation, 2016)

CoopTFD: a repository for predicted yeast cooperative transcription factor pairs. - Wei-Sheng Wu; Fu-Jou Lai; Bor-Wen Tu; Darby Tien-Hao Chang (Database J. Biol. Databases Curation, 2016)

An automatic method to calculate heart rate from zebrafish larval cardiac videos. - Chia-Pin Kang; Hung-Chi Tu; Tzu-Fun Fu; Jhe-Ming Wu; Po-Hsun Chu; Darby Tien-Hao Chang (BMC Bioinform., 2018)

SigUNet: signal peptide recognition based on semantic segmentation. - Jhe-Ming Wu; Yu-Chen Liu; Darby Tien-Hao Chang (BMC Bioinform., 2019)

Trompt: Towards a Better Deep Neural Network for Tabular Data. - Kuan-Yu Chen; Ping-Han Chiang; Hsin-Rung Chou; Ting-Wei Chen; Tien-Hao Chang (ICML, 2023)

DOFEN: Deep Oblivious Forest ENsemble. - Kuan-Yu Chen; Ping-Han Chiang; Hsin-Rung Chou; Chih-Sheng Chen; Tien-Hao Chang (NeurIPS, 2024)

Exploring the Affordance Effect of Visual Properties Associated with Virtual Keyboard Buttons on Smartphones. - Hsi-Jen Chen; Ming-Da Wu; I-Chung Lo; Darby Tien-Hao Chang (Int. J. Hum. Comput. Interact., 2025)