Bayesian integrated modeling of expression data: a case study on RhoG. - Rashi Gupta; Dario Greco; Petri Auvinen; Elja Arjas (BMC Bioinform., 2010)

Drug Repositioning: A Machine-Learning Approach through Data Integration. - Francesco Napolitano; Yan Zhao; Vania M. Moreira; Roberto Tagliaferri; Juha Kere; Mauro D'Amato; Dario Greco (J. Cheminformatics, 2013)

Transcriptome dynamics-based operon prediction in prokaryotes. - Vittorio Fortino; Olli-Pekka Smolander; Petri Auvinen; Roberto Tagliaferri; Dario Greco (BMC Bioinform., 2014)

Impact of different metrics on multi-view clustering. - Angela Serra; Dario Greco; Roberto Tagliaferri (IJCNN, 2015)

BACA: bubble chArt to compare annotations. - Vittorio Fortino; Harri Alenius; Dario Greco (BMC Bioinform., 2015)

A multi-view genomic data simulator. - Michele Fratello; Angela Serra; Vittorio Fortino; Giancarlo Raiconi; Roberto Tagliaferri; Dario Greco (BMC Bioinform., 2015)

MVDA: a multi-view genomic data integration methodology. - Angela Serra; Michele Fratello; Vittorio Fortino; Giancarlo Raiconi; Roberto Tagliaferri; Dario Greco (BMC Bioinform., 2015)

Time aware knowledge extraction to analyze nanosafety cluster scientific activities. - Carmen De Maio; Mimmo Parente; Giuseppe Fenza; Dario Greco (CEC, 2016)

Data integration in genomics and systems biology. - Angela Serra; Michele Fratello; Dario Greco; Roberto Tagliaferri (CEC, 2016)

Effectiveness of projection techniques in genomic data analysis. - Paola Galdi; Angela Serra; Dario Greco; Roberto Tagliaferri (RTSI, 2016)

CONDOP: an R package for CONdition-Dependent Operon Predictions. - Vittorio Fortino; Roberto Tagliaferri; Dario Greco (Bioinform., 2016)

INfORM: Inference of NetwOrk Response Modules. - Veer Singh Marwah; Pia Anneli Sofia Kinaret; Angela Serra; Giovanni Scala; Antti Lauerma; Vittorio Fortino; Dario Greco (Bioinform., 2018)

IntEREst: intron-exon retention estimator. - Ali Oghabian; Dario Greco; Mikko J. Frilander (BMC Bioinform., 2018)

FunMappOne: a tool to hierarchically organize and visually navigate functional gene annotations in multiple experiments. - Giovanni Scala; Angela Serra; Veer Singh Marwah; Laura Aliisa Saarimäki; Dario Greco (BMC Bioinform., 2019)

An integrated quantitative structure and mechanism of action-activity relationship model of human serum albumin binding. - Angela Serra; Serli Önlü; Pietro Coretto; Dario Greco (J. Cheminformatics, 2019)

eUTOPIA: solUTion for Omics data PreprocessIng and Analysis. - Veer Singh Marwah; Giovanni Scala; Pia Anneli Sofia Kinaret; Angela Serra; Harri Alenius; Vittorio Fortino; Dario Greco (Source Code Biol. Medicine, 2019)

Feature set optimization in biomarker discovery from genome-scale data. - Vittorio Fortino; Giovanni Scala; Dario Greco (Bioinform., 2020)

MaNGA: a novel multi-niche multi-objective genetic algorithm for QSAR modelling. - Angela Serra; Serli Önlü; Paola Festa; Vittorio Fortino; Dario Greco (Bioinform., 2020)

BMDx: a graphical Shiny application to perform Benchmark Dose analysis for transcriptomics data. - Angela Serra; Laura Aliisa Saarimäki; Michele Fratello; Veer Singh Marwah; Dario Greco (Bioinform., 2020)

Integrated network analysis reveals new genes suggesting COVID-19 chronic effects and treatment. - Alisa Pavel; Giusy del Giudice; Antonio Federico; Antonio Di Lieto; Pia Anneli Sofia Kinaret; Angela Serra; Dario Greco (Briefings Bioinform., 2021)

A systematic comparison of data- and knowledge-driven approaches to disease subtype discovery. - Teemu J. Rintala; Antonio Federico; Leena Latonen; Dario Greco; Vittorio Fortino (Briefings Bioinform., 2021)

VOLTA: adVanced mOLecular neTwork Analysis. - Alisa Pavel; Antonio Federico; Giusy del Giudice; Angela Serra; Dario Greco (Bioinform., 2021)

CpGmotifs: a tool to discover DNA motifs associated to CpG methylation events. - Giovanni Scala; Antonio Federico; Dario Greco (BMC Bioinform., 2021)

Clustering based approach for population level identification of condition-associated T-cell receptor β-chain CDR3 sequences. - Dawit A. Yohannes; Katri Kaukinen; Kalle Kurppa; Päivi Saavalainen; Dario Greco (BMC Bioinform., 2021)

Computationally prioritized drugs inhibit SARS-CoV-2 infection and syncytia formation. - Angela Serra; Michele Fratello; Antonio Federico; Ravi Ojha; Riccardo Provenzani; Ervin Tasnádi; Luca Cattelani; Giusy del Giudice; Pia Anneli Sofia Kinaret; Laura Aliisa Saarimäki; Alisa Pavel; Suvi Kuivanen; et al. (Briefings Bioinform., 2022)