tinyIFD: A High-Throughput Binding Pose Refinement Workflow Through Induced-Fit Ligand Docking. - Darren J. Hsu; Russell B. Davidson; Ada Sedova; Jens Glaser (J. Chem. Inf. Model., 2023)

TwoFold: Highly accurate structure and affinity prediction for protein-ligand complexes from sequences. - Darren J. Hsu; Hao Lu 001; Aditya Kashi; Michael A. Matheson; John Gounley; Feiyi Wang; Wayne Joubert; Jens Glaser (Int. J. High Perform. Comput. Appl., 2023)

Improving Inverse Folding for Peptide Design with Diversity-regularized Direct Preference Optimization. - Ryan Park; Darren J. Hsu; C. Brian Roland; Maria Korshunova; Chen Tessler; Shie Mannor; Olivia Viessmann; Bruno Trentini (CoRR, 2024)