The PRINTS Database of Protein Fingerprints: A Novel Information Resource for Computational Molecular Biology. - Terri K. Attwood; H. Avison; Michael E. Beck; Maria C. Bewley; Alan J. Bleasby; F. Brewster; P. Cooper; Kirill Degtyarenko; A. J. Geddes; Darren R. Flower; M. P. Kelly; Shaun Lott; et al. (J. Chem. Inf. Comput. Sci., 1997)

On the Properties of Bit String-Based Measures of Chemical Similarity. - Darren R. Flower (J. Chem. Inf. Comput. Sci., 1998)

The PRINTS protein fingerprint database in its fifth year. - Terri K. Attwood; Michael E. Beck; Darren R. Flower; Philip Scordis; J. N. Selley (Nucleic Acids Res., 1998)

FingerPRINTScan: intelligent searching of the PRINTS motif database. - Philip Scordis; Darren R. Flower; Terri K. Attwood (Bioinform., 1999)

PRINTS prepares for the new millennium. - Terri K. Attwood; Darren R. Flower; A. P. Lewis; J. E. Mabey; S. R. Morgan; Philip Scordis; J. N. Selley; W. Wright (Nucleic Acids Res., 1999)

PRINTS-S: the database formerly known as PRINTS. - Terri K. Attwood; Michael D. R. Croning; Darren R. Flower; A. P. Lewis; J. E. Mabey; Philip Scordis; J. N. Selley; W. Wright (Nucleic Acids Res., 2000)

JenPep: a database of quantitative functional peptide data for immunology. - Martin J. Blythe; Irini A. Doytchinova; Darren R. Flower (Bioinform., 2002)

A Comparative Molecular Similarity Index Analysis (CoMSIA) study identifies an HLA-A2 binding supermotif. - Irini A. Doytchinova; Darren R. Flower (J. Comput. Aided Mol. Des., 2002)

PRINTS and PRINTS-S shed light on protein ancestry. - Terri K. Attwood; Martin J. Blythe; Darren R. Flower; Anna Gaulton; J. E. Mabey; Neil Maudling; L. McGregor; Alex L. Mitchell; G. Moulton; K. Paine; Philip Scordis (Nucleic Acids Res., 2002)

FIMM, a database of functional molecular immunology: update 2002. - Christian Schönbach; Judice L. Y. Koh; Darren R. Flower; Limsoon Wong; Vladimir Brusic (Nucleic Acids Res., 2002)

Towards the in silico identification of class II restricted T-cell epitopes: a partial least squares iterative self-consistent algorithm for affinity prediction. - Irini A. Doytchinova; Darren R. Flower (Bioinform., 2003)

JenPep: A Novel Computational Information Resource for Immunobiology and Vaccinology. - Helen M. McSparron; Martin J. Blythe; Christianna Zygouri; Irini A. Doytchinova; Darren R. Flower (J. Chem. Inf. Comput. Sci., 2003)

PRINTS and its automatic supplement, prePRINTS. - Terri K. Attwood; Paul Bradley; Darren R. Flower; Anna Gaulton; Neil Maudling; Alex L. Mitchell; G. Moulton; A. Nordle; K. Paine; P. Taylor; A. Uddin; Christianna Zygouri (Nucleic Acids Res., 2003)

MHCPred: a server for quantitative prediction of peptide-MHC binding. - Pingping Guan; Irini A. Doytchinova; Christianna Zygouri; Darren R. Flower (Nucleic Acids Res., 2003)

BPROMPT: a consensus server for membrane protein prediction. - Paul D. Taylor; Terri K. Attwood; Darren R. Flower (Nucleic Acids Res., 2003)

Large-scale molecular dynamics simulations of HLA-A*0201 complexed with a tumor-specific antigenic peptide: Can the α3 and β2m domains be neglected? - Shunzhou Wan; Peter V. Coveney; Darren R. Flower (J. Comput. Chem., 2004)

DSD - An integrated, web-accessible database of Dehydrogenase Enzyme Stereospecificities. - Christopher P. Toseland; Helen M. McSparron; Darren R. Flower (BMC Bioinform., 2005)

Towards the chemometric dissection of peptide - HLA-A*0201 binding affinity: comparison of local and global QSAR models. - Irini A. Doytchinova; Valerie Walshe; Persephone Borrow; Darren R. Flower (J. Comput. Aided Mol. Des., 2005)

In Silico Prediction of Peptide Binding Affinity to Class I Mouse Major Histocompatibility Complexes: A Comparative Molecular Similarity Index Analysis (CoMSIA) Study. - Channa K. Hattotuwagama; Irini A. Doytchinova; Darren R. Flower (J. Chem. Inf. Model., 2005)

EpiJen: a server for multistep T cell epitope prediction. - Irini A. Doytchinova; Pingping Guan; Darren R. Flower (BMC Bioinform., 2006)

Quantitative prediction of mouse class I MHC peptide binding affinity using support vector machine regression (SVR) models. - Wen Liu; Xiangshan Meng; Qiqi Xu; Darren R. Flower; Tongbin Li (BMC Bioinform., 2006)

Predicting Class II MHC-Peptide binding: a kernel based approach using similarity scores. - Jesper Salomon; Darren R. Flower (BMC Bioinform., 2006)

SVRMHC prediction server for MHC-binding peptides. - Ji Wan; Wen Liu; Qiqi Xu; Yongliang Ren; Darren R. Flower; Tongbin Li (BMC Bioinform., 2006)

Toward Prediction of Class II Mouse Major Histocompatibility Complex Peptide Binding Affinity: in Silico Bioinformatic Evaluation Using Partial Least Squares, a Robust Multivariate Statistical Technique. - Channa K. Hattotuwagama; Christopher P. Toseland; Pingping Guan; Debra J. Taylor; Shelley L. Hemsley; Irini A. Doytchinova; Darren R. Flower (J. Chem. Inf. Model., 2006)

PPD v1.0 - an integrated, web-accessible database of experimentally determined protein pKa values. - Christopher P. Toseland; Helen M. McSparron; Matthew N. Davies; Darren R. Flower (Nucleic Acids Res., 2006)

On the hierarchical classification of G protein-coupled receptors. - Matthew N. Davies; Andrew Secker; Alex Alves Freitas; Miguel Mendao; Jonathan Timmis; Darren R. Flower (Bioinform., 2007)

VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines. - Irini A. Doytchinova; Darren R. Flower (BMC Bioinform., 2007)

Predicting Class I Major Histocompatibility Complex (MHC) Binders Using Multivariate Statistics: Comparison of Discriminant Analysis and Multiple Linear Regression. - Irini A. Doytchinova; Darren R. Flower (J. Chem. Inf. Model., 2007)

An Artificial Immune System for Evolving Amino Acid Clusters Tailored to Protein Function Prediction. - Andrew Secker; Matthew N. Davies; Alex Alves Freitas; Jonathan Timmis; Edward Clark; Darren R. Flower (ICARIS, 2008)

Optimizing amino acid groupings for GPCR classification. - Matthew N. Davies; Andrew Secker; Alex Alves Freitas; Edward Clark; Jonathan Timmis; Darren R. Flower (Bioinform., 2008)

An Artificial Immune System for Clustering Amino Acids in the Context of Protein Function Classification. - Andrew Secker; Matthew N. Davies; Alex Alves Freitas; Jonathan Timmis; Edward Clark; Darren R. Flower (J. Math. Model. Algorithms, 2009)

EpiTOP - a proteochemometric tool for MHC class II binding prediction. - Ivan Dimitrov; Panayot Garnev; Darren R. Flower; Irini A. Doytchinova (Bioinform., 2010)

Hierarchical classification of G-Protein-Coupled Receptors with data-driven selection of attributes and classifiers. - Andrew Secker; Matthew N. Davies; Alex Alves Freitas; Edward Clark; Jonathan Timmis; Darren R. Flower (Int. J. Data Min. Bioinform., 2010)

AntigenDB: an immunoinformatics database of pathogen antigens. - Hifzur Rahman Ansari; Darren R. Flower; G. P. S. Raghava (Nucleic Acids Res., 2010)

Novel visualization methods for protein data. - Shahzad Mumtaz; Ian T. Nabney; Darren R. Flower (CIBCB, 2012)

AllerTOP - a server for in silico prediction of allergens. - Ivan Dimitrov; Darren R. Flower; Irini A. Doytchinova (BMC Bioinform., 2013)

Multi-level Visualisation using Gaussian Process Latent Variable Models. - Shahzad Mumtaz; Darren R. Flower; Ian T. Nabney (IVAPP, 2014)

PIP-DB: the Protein Isoelectric Point database. - Egle Bunkute; Christopher Cummins; Fraser J. Crofts; Gareth Bunce; Ian T. Nabney; Darren R. Flower (Bioinform., 2015)

A statistical physics perspective on alignment-independent protein sequence comparison. - Amit K. Chattopadhyay; Diar Nasiev; Darren R. Flower (Bioinform., 2015)

Accurate estimation of isoelectric point of protein and peptide based on amino acid sequences. - Enrique Audain; Yassel Ramos; Henning Hermjakob; Darren R. Flower; Yasset Pérez-Riverol (Bioinform., 2016)

Towards the knowledge-based design of universal influenza epitope ensemble vaccines. - Qamar M. Sheikh; Derek Gatherer; Pedro A. Reche; Darren R. Flower (Bioinform., 2016)

Computational design of a legacy-based epitope vaccine against Human Cytomegalovirus. - Monica J. Quinzo; Esther M. Lafuente; Pedro A. Reche; Darren R. Flower (BIBM, 2018)

Computational assembly of a human Cytomegalovirus vaccine upon experimental epitope legacy. - Monica J. Quinzo; Esther M. Lafuente; Pilar Zuluaga; Darren R. Flower; Pedro A. Reche (BMC Bioinform., 2019)

Correction to: Computational assembly of a human Cytomegalovirus vaccine upon experimental epitope legacy. - Monica J. Quinzo; Esther M. Lafuente; Pilar Zuluaga; Darren R. Flower; Pedro A. Reche (BMC Bioinform., 2020)

Extracting prime protein targets as possible drug candidates: machine learning evaluation. - Subhagata Chattopadhyay; Nhat Phuong Do; Darren R. Flower; Amit K. Chattopadhyay (Medical Biol. Eng. Comput., 2023)