Ursprung: Provenance for Large-Scale Analytics Environments. - Lukas Rupprecht; James C. Davis 001; Constantine Arnold; Alexander L. R. Lubbock; Darren R. Tyson; Deepavali Bhagwat (SIGMOD Conference, 2019)

Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers. - David J. Wooten; Sarah M. Groves; Darren R. Tyson; Qi Liu 024; Jing S. Lim; Réka Albert; Carlos F. Lopez; Julien Sage; Vito Quaranta (PLoS Comput. Biol., 2019)

Thunor: visualization and analysis of high-throughput dose-response datasets. - Alexander L. R. Lubbock; Leonard A. Harris; Vito Quaranta; Darren R. Tyson; Carlos F. Lopez (Nucleic Acids Res., 2021)

A community-based approach to image analysis of cells, tissues and tumors. - Juan Carlos Vizcarra; Erik A. Burlingame; Clemens B. Hug; Yury Goltsev; Brian S. White; Darren R. Tyson; Artem Sokolov (Comput. Medical Imaging Graph., 2022)

Identifying mechanisms driving the early response of triple negative breast cancer patients to neoadjuvant chemotherapy using a mechanistic model integrating in vitro and in vivo imaging data. - Guillermo Lorenzo; Angela M. Jarrett; Christian T. Meyer; Vito Quaranta; Darren R. Tyson; Thomas E. Yankeelov (CoRR, 2022)

A global sensitivity analysis of a mechanistic model of neoadjuvant chemotherapy for triple negative breast cancer constrained by in vitro and in vivo imaging data. - Guillermo Lorenzo; Angela M. Jarrett; Christian T. Meyer; Julie C. DiCarlo; John Virostko; Vito Quaranta; Darren R. Tyson; Thomas E. Yankeelov (Eng. Comput., 2024)