Darren J. Wilkinson

According to our database, Darren J. Wilkinson authored at least 43 papers between 1998 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

MGnify: the microbiome sequence data analysis resource in 2023.

Lorna J. Richardson, Ben Allen, Germana Baldi, Martin Beracochea, Maxwell L. Bileschi, Tony Burdett, Josephine Burgin, Juan Caballero, Guy Cochrane, Lucy J. Colwell, Tom Curtis, Alejandra Escobar-Zepeda, Tatiana A. Gurbich, Varsha Kale, Anton I. Korobeynikov, Shriya Raj, Alexander B. Rogers, Ekaterina A. Sakharova, Santiago Sanchez, Darren J. Wilkinson, Robert D. Finn

Nucleic Acids Res., January, 2023

A sparse Bayesian hierarchical vector autoregressive model for microbial dynamics in a wastewater treatment plant.

Naomi E. Hannaford, Sarah E. Heaps, Tom M. W. Nye, Thomas P. Curtis, Ben Allen, Andrew Golightly, Darren J. Wilkinson

Comput. Stat. Data Anal., 2023

2020

Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1.

Lucian P. Smith, Stuart L. Moodie, Frank T. Bergmann, Colin S. Gillespie, Sarah M. Keating, Matthias König, Chris J. Myers, Maciek J. Swat, Darren J. Wilkinson, Michael Hucka

J. Integr. Bioinform., 2020

2019

Bayesian emulation and calibration of an individual-based model of microbial communities.

Oluwole K. Oyebamiji, Darren J. Wilkinson, Bowen Li, Pahala Gedara Jayathilake, Paolo Zuliani, Thomas P. Curtis

J. Comput. Sci., 2019

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.

Michael Hucka, Frank T. Bergmann, Claudine Chaouiya, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Matthias König, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Rahuman S. Malik-Sheriff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson, Fengkai Zhang

J. Integr. Bioinform., 2019

A review of stochastic block models and extensions for graph clustering.

Clement Lee, Darren J. Wilkinson

Appl. Netw. Sci., 2019

2018

A network epidemic model for online community commissioning data.

Clement Lee, Andrew Garbett, Darren J. Wilkinson

Stat. Comput., 2018

Composable models for online Bayesian analysis of streaming data.

Jonathan Law, Darren J. Wilkinson

Stat. Comput., 2018

EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.

Alex L. Mitchell, Maxim Scheremetjew, Hubert Denise, Simon C. Potter, Aleksandra Tarkowska, Matloob Qureshi, Gustavo A. Salazar, Sebastien Pesseat, Miguel A. Boland, Fiona M. I. Hunter, Petra ten Hoopen, Blaise T. F. Alako, Clara Amid, Darren J. Wilkinson, Thomas P. Curtis, Guy Cochrane, Robert D. Finn

Nucleic Acids Res., 2018

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.

Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson

J. Integr. Bioinform., 2018

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.

Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson

J. Integr. Bioinform., 2018

A Social Network Analysis of Articles on Social Network Analysis.

Clement Lee, Darren J. Wilkinson

CoRR, 2018

A hierarchical model of non-homogeneous Poisson processes for Twitter retweets.

Clement Lee, Darren J. Wilkinson

CoRR, 2018

Automating the Placement of Time Series Models for IoT Healthcare Applications.

Lauren Roberts, Peter Michalák, Sarah E. Heaps, Michael Trenell, Darren J. Wilkinson, Paul Watson

Proceedings of the 14th IEEE International Conference on e-Science, 2018

2017

Gaussian process emulation of an individual-based model simulation of microbial communities.

Oluwole K. Oyebamiji, Darren J. Wilkinson, Pahala Gedara Jayathilake, Thomas P. Curtis, S. P. Rushton, Bowen Li, P. Gupta

J. Comput. Sci., 2017

2015

Scalable inference for Markov processes with intractable likelihoods.

Jamie Owen, Darren J. Wilkinson, Colin S. Gillespie

Stat. Comput., 2015

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.

Michael Hucka, Frank T. Bergmann, Stefan Hoops, Sarah M. Keating, Sven Sahle, James C. Schaff, Lucian P. Smith, Darren J. Wilkinson

J. Integr. Bioinform., 2015

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions.

Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson

J. Integr. Bioinform., 2015

2014

Fast Bayesian parameter estimation for stochastic logistic growth models.

Jonathan Heydari, Conor Lawless, David A. Lydall, Darren J. Wilkinson

Biosyst., 2014

2013

Moment closure based parameter inference of stochastic kinetic models.

Peter Milner, Colin S. Gillespie, Darren J. Wilkinson

Stat. Comput., 2013

2012

A whole-body mathematical model of cholesterol metabolism and its age-associated dysregulation.

Mark Mc Auley, Darren J. Wilkinson, Janette Jones, Thomas B. L. Kirkwood

BMC Syst. Biol., 2012

Bayesian integration of networks without gold standards.

Jochen Weile, Katherine James, Jennifer Hallinan, Simon J. Cockell, Phillip W. Lord, Anil Wipat, Darren J. Wilkinson

Bioinform., 2012

2011

Customizable views on semantically integrated networks for systems biology.

Jochen Weile, Matthew R. Pocock, Simon J. Cockell, Phillip W. Lord, James M. Dewar, Eva-Maria Holstein, Darren J. Wilkinson, David A. Lydall, Jennifer Hallinan, Anil Wipat

Bioinform., 2011

2010

An integrated dataset for in silico drug discovery.

Simon J. Cockell, Jochen Weile, Phillip W. Lord, Claire Wipat, Dmytro Andriychenko, Matthew R. Pocock, Darren J. Wilkinson, Malcolm Young, Anil Wipat

J. Integr. Bioinform., 2010

The Integration of Genetic Maps Using Bayesian Inference.

Howsun Jow, Madhuchhanda Bhattacharjee, Richard J. Boys, Darren J. Wilkinson

J. Comput. Biol., 2010

Colonyzer: automated quantification of micro-organism growth characteristics on solid agar.

Conor Lawless, Darren J. Wilkinson, Alexander Young, Stephen G. Addinall, David A. Lydall

BMC Bioinform., 2010

CaliBayes and BASIS: integrated tools for the calibration, simulation and storage of biological simulation models.

Yuhui Chen, Conor Lawless, Colin S. Gillespie, Jake Wu, Richard J. Boys, Darren J. Wilkinson

Briefings Bioinform., 2010

Markov Chain Monte Carlo Algorithms for SDE Parameter Estimation.

Darren J. Wilkinson, Andrew Golightly

Proceedings of the Learning and Inference in Computational Systems Biology., 2010

2008

Bayesian inference for a discretely observed stochastic kinetic model.

Richard J. Boys, Darren J. Wilkinson, Thomas B. L. Kirkwood

Stat. Comput., 2008

Bayesian inference for nonlinear multivariate diffusion models observed with error.

Andrew Golightly, Darren J. Wilkinson

Comput. Stat. Data Anal., 2008

The SBML discrete stochastic models test suite.

Thomas W. Evans, Colin S. Gillespie, Darren J. Wilkinson

Bioinform., 2008

2007

Bayesian methods in bioinformatics and computational systems biology.

Darren J. Wilkinson

Briefings Bioinform., 2007

2006

Bayesian sequential inference for nonlinear multivariate diffusions.

Andrew Golightly, Darren J. Wilkinson

Stat. Comput., 2006

BASIS: an internet resource for network modelling.

Colin S. Gillespie, Darren J. Wilkinson, Daryl P. Shanley, Carole J. Proctor, Richard J. Boys, Thomas B. L. Kirkwood

J. Integr. Bioinform., 2006

Bayesian Sequential Inference for Stochastic Kinetic Biochemical Network Models.

Andrew Golightly, Darren J. Wilkinson

J. Comput. Biol., 2006

Tools for the SBML Community.

Colin S. Gillespie, Darren J. Wilkinson, Carole J. Proctor, Daryl P. Shanley, Richard J. Boys, Thomas B. L. Kirkwood

Bioinform., 2006

2005

CaliBayes: Integration of GRID based simulation and data resources for Bayesian calibration of biological models.

Richard J. Boys, Daniel Henderson, Thomas B. L. Kirkwood, Darren J. Wilkinson, W. Eryk Wolski

BMC Bioinform., 2005

Modelling Lipid Metabolism to Improve Healthy Ageing.

Mark Mc Auley, Janette Jones, Darren J. Wilkinson, Thomas B. L. Kirkwood

BMC Bioinform., 2005

2004

A sparse matrix approach to Bayesian computation in large linear models.

Darren J. Wilkinson, Stephen K. H. Yeung

Comput. Stat. Data Anal., 2004

2002

Conditional simulation from highly structured Gaussian systems, with application to blocking-MCMC for the Bayesian analysis of very large linear models.

Darren J. Wilkinson, Stephen K. H. Yeung

Stat. Comput., 2002

2001

Restricted Prior Inference for Complex Uncertainty Structures.

Michael M. Goldstein, Darren J. Wilkinson

Ann. Math. Artif. Intell., 2001

2000

Bayes linear analysis for graphical models: The geometric approach to local computation and interpretive graphics.

Michael M. Goldstein, Darren J. Wilkinson

Stat. Comput., 2000

1998

An Object-Oriented Approach to Local Computation in Bayes Linear Belief Networks.

Darren J. Wilkinson

Proceedings of the COMPSTAT 1998, 1998