ICE–Visual Analytics for Transportation Incident Datasets. - Michael L. Pack; Krist Wongsuphasawat; Michael VanDaniker; Darya Filippova (IRI, 2009)

The missing models: a data-driven approach for learning how networks grow. - Rob Patro; Geet Duggal; Emre Sefer; Hao Wang 024; Darya Filippova; Carl Kingsford (KDD, 2012)

Dynamic Exploration of Recording Sessions between Jazz Musicians over Time. - Darya Filippova; Michael Fitzgerald; Carl Kingsford; Fernando Benadon (SocialCom/PASSAT, 2012)

Resolving Spatial Inconsistencies in Chromosome Conformation Data. - Geet Duggal; Rob Patro; Emre Sefer; Hao Wang 024; Darya Filippova; Samir Khuller; Carl Kingsford (WABI, 2012)

Coral: an integrated suite of visualizations for comparing clusterings. - Darya Filippova; Aashish Gadani; Carl Kingsford (BMC Bioinform., 2012)

Multiscale Identification of Topological Domains in Chromatin. - Darya Filippova; Rob Patro; Geet Duggal; Carl Kingsford (WABI, 2013)

Resolving spatial inconsistencies in chromosome conformation measurements. - Geet Duggal; Rob Patro; Emre Sefer; Hao Wang 024; Darya Filippova; Samir Khuller; Carl Kingsford (Algorithms Mol. Biol., 2013)

Identification of alternative topological domains in chromatin. - Darya Filippova; Rob Patro; Geet Duggal; Carl Kingsford (Algorithms Mol. Biol., 2014)

Rapid, separable compression enables fast analyses of sequence alignments. - Darya Filippova; Carl Kingsford (BCB, 2015)

Improving Bloom Filter Performance on Sequence Data Using k -mer Bloom Filters. - David Pellow; Darya Filippova; Carl Kingsford (RECOMB, 2016)

Improving Bloom Filter Performance on Sequence Data Using k-mer Bloom Filters. - David Pellow; Darya Filippova; Carl Kingsford (J. Comput. Biol., 2017)

Polaris: A Safety-focused LLM Constellation Architecture for Healthcare. - Subhabrata Mukherjee; Paul Gamble; Markel Sanz Ausin; Neel Kant; Kriti Aggarwal; Neha Manjunath; Debajyoti Datta; Zhengliang Liu; Jiayuan Ding; Sophia Busacca; Cezanne Bianco; Swapnil Sharma; et al. (CoRR, 2024)