Probing the Flexibility of Large Conformational Changes in Protein Structures through Local Perturbations. - Bosco K. Ho; David A. Agard (PLoS Comput. Biol., 2009)

Unfolding Simulations Reveal the Mechanism of Extreme Unfolding Cooperativity in the Kinetically Stable α-Lytic Protease. - Neema L. Salimi; Bosco K. Ho; David A. Agard (PLoS Comput. Biol., 2010)

A method for integrative structure determination of protein-protein complexes. - Dina Schneidman-Duhovny; Andrea Rossi 005; Agustin Avila-Sakar; Seung Joong Kim; Javier A. Velázquez-Muriel; Pavel Strop; Hong Liang; Kristin A. Krukenberg; Maofu Liao; Ho Min Kim; Solmaz Sobhanifar; Volker Dötsch; et al. (Bioinform., 2012)

The Free Energy Profile of Tubulin Straight-Bent Conformational Changes, with Implications for Microtubule Assembly and Drug Discovery. - Lili X. Peng; Monica T. Hsu; Massimiliano Bonomi; David A. Agard; Matthew P. Jacobson (PLoS Comput. Biol., 2014)