Parallel Algorithms for Image Histogramming and Connected Components with an Experimental Study (Extended Abstract). - David A. Bader; Joseph F. JáJá (PPoPP, 1995)

Scalable data parallel algorithms for texture synthesis using Gibbs random fields. - David A. Bader; Joseph F. JáJá; Rama Chellappa (IEEE Trans. Image Process., 1995)

Practical Parallel Algorithms for Dynamic Data Redistribution, Median Finding, and Selection. - David A. Bader; Joseph F. JáJá (IPPS, 1996)

Parallel Algorithms for Personalized Communication and Sorting with an Experimental Study (Extended Abstract). - David R. Helman; David A. Bader; Joseph F. JáJá (SPAA, 1996)

Practical Parallel Algorithms for Personalized Communication and Integer Sorting. - David A. Bader; David R. Helman; Joseph F. JáJá (ACM J. Exp. Algorithmics, 1996)

Parallel Algorithms for Image Histogramming and Connected Components with an Experimental Study. - David A. Bader; Joseph F. JáJá (J. Parallel Distributed Comput., 1996)

Parallel algorithms for image enhancement and segmentation by region growing, with an experimental study. - David A. Bader; Joseph F. JáJá; David Harwood; Larry S. Davis (J. Supercomput., 1996)

A New Deterministic Parallel Sorting Algorithm with an Experimental Evaluation. - David R. Helman; Joseph F. JáJá; David A. Bader (ACM J. Exp. Algorithmics, 1998)

A Randomized Parallel Sorting Algorithm with an Experimental Study. - David R. Helman; David A. Bader; Joseph F. JáJá (J. Parallel Distributed Comput., 1998)

Design and Analysis of the Alliance/University of New Mexico Roadrunner Linux SMP SuperCluster. - David A. Bader; Arthur B. Maccabe; Jason R. Mastaler; John K. McIver III; Patricia A. Kovatch (IWCC, 1999)

SIMPLE: A Methodology for Programming High Performance Algorithms on Clusters of Symmetric Multiprocessors (SMPs). - David A. Bader; Joseph F. JáJá (J. Parallel Distributed Comput., 1999)

A New, Architectural Paradigm for High-performance Computing. - David A. Bader (Parallel Distributed Comput. Pract., 1999)

Tutorial A: Design and Analysis of High Performance Clusters. - Rob Pennington; David A. Bader; Barney Maccabe; Patricia A. Kovatch; Stephen L. Scott (CLUSTER, 2000)

Algorithm Engineering for Parallel Computation. - David A. Bader; Bernard M. E. Moret; Peter Sanders 001 (Experimental Algorithmics, 2000)

A New Implmentation and Detailed Study of Breakpoint Analysis. - Bernard M. E. Moret; Stacia K. Wyman; David A. Bader; Tandy J. Warnow; Mi Yan (Pacific Symposium on Biocomputing, 2001)

Using PRAM Algorithms on a Uniform-Memory-Access Shared-Memory Architecture. - David A. Bader; Ajith K. Illendula; Bernard M. E. Moret; Nina R. Weisse-Bernstein (WAE, 2001)

Applications. - David A. Bader; Rob Pennington (Int. J. High Perform. Comput. Appl., 2001)

A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study. - David A. Bader; Bernard M. E. Moret; Mi Yan (J. Comput. Biol., 2001)

Evaluating Arithmetic Expressions Using Tree Contraction: A Fast and Scalable Parallel Implementation for Symmetric Multiprocessors (SMPs) (Extended Abstract). - David A. Bader; Sukanya Sreshta; Nina R. Weisse-Bernstein (HiPC, 2002)

Workshop Introduction. - David A. Bader; Srinivas Aluru (IPDPS, 2002)

High-Performance Algorithm Engineering for Computational Phylogenetics. - Bernard M. E. Moret; David A. Bader; Tandy J. Warnow (J. Supercomput., 2002)

Guest Editor's Introduction: Special issue on high-performance computational biology. - Srinivas Aluru; David A. Bader (J. Parallel Distributed Comput., 2003)

Topic 17: High Performance Bioinformatics. - Mohammed Javeed Zaki; David A. Bader; Johan Montagnat; Concettina Guerra (Euro-Par, 2004)

A Parallel State Assignment Algorithm for Finite State Machines. - David A. Bader; Kamesh Madduri (HiPC, 2004)

Lock-Free Parallel Algorithms: An Experimental Study. - Guojing Cong; David A. Bader (HiPC, 2004)

The Euler Tour Technique and Parallel Rooted Spanning Tree. - Guojing Cong; David A. Bader (ICPP, 2004)

A Novel FDTD Application Featuring OpenMP-MPI Hybrid Parallelization. - Mehmet F. Su; Ihab El-Kady; David A. Bader; Shawn-Yu Lin (ICPP, 2004)

A Fast, Parallel Spanning Tree Algorithm for Symmetric Multiprocessors. - David A. Bader; Guojing Cong (IPDPS, 2004)

Computational biology and high-performance computing. - David A. Bader (Commun. ACM, 2004)

Special Issue: High Performance Computational Biology. - David A. Bader; Srinivas Aluru (Concurr. Pract. Exp., 2004)

A Framework for Measuring Supercomputer Productivity. - Marc Snir; David A. Bader (Int. J. High Perform. Comput. Appl., 2004)

An improved, randomized algorithm for parallel selection with an experimental study. - David A. Bader (J. Parallel Distributed Comput., 2004)

A Cache-Aware Parallel Implementation of the Push-Relabel Network Flow Algorithm and Experimental Evaluation of the Gap Relabeling Heuristic. - David A. Bader; Vipin Sachdeva (PDCS, 2005)

An Empirical Analysis of Parallel Random Permutation Algorithms ON SMPs. - Guojing Cong; David A. Bader (PDCS, 2005)

Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system. - David A. Bader; Vipin Sachdeva (CSB Workshops, 2005)

Design and Implementation of the HPCS Graph Analysis Benchmark on Symmetric Multiprocessors. - David A. Bader; Kamesh Madduri (HiPC, 2005)

On the Architectural Requirements for Efficient Execution of Graph Algorithms. - David A. Bader; Guojing Cong; John Feo (ICPP, 2005)

An Experimental Study of Parallel Biconnected Components Algorithms on Symmetric Multiprocessors (SMPs). - Guojing Cong; David A. Bader (IPDPS, 2005)

High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology. - David A. Bader (WEA, 2005)

A fast, parallel spanning tree algorithm for symmetric multiprocessors (SMPs). - David A. Bader; Guojing Cong (J. Parallel Distributed Comput., 2005)

Parallel Computational Biology. - Srinivas Aluru; Nancy M. Amato; David A. Bader; Suchindra Bhandarkar; Laxmikant V. Kalé; Dan C. Marinescu (Parallel Processing for Scientific Computing, 2006)

Parallel Shortest Path Algorithms for Solving Large-Scale Instances. - Kamesh Madduri; David A. Bader; Jonathan W. Berry; Joseph R. Crobak (The Shortest Path Problem, 2006)

ExactMP: An Efficient Parallel Exact Solver for Phylogenetic Tree Reconstruction Using Maximum Parsimony. - David A. Bader; Vaddadi P. Chandu; Mi Yan (ICPP, 2006)

Designing Multithreaded Algorithms for Breadth-First Search and st-connectivity on the Cray MTA-2. - David A. Bader; Kamesh Madduri (ICPP, 2006)

Parallel Algorithms for Evaluating Centrality Indices in Real-world Networks. - David A. Bader; Kamesh Madduri (ICPP, 2006)

Performance analysis of parallel programs via message-passing graph traversal. - Matthew J. Sottile; Vaddadi P. Chandu; David A. Bader (IPDPS, 2006)

M11 - High-performance computing methods for computational genomics. - Srinivas Aluru; David A. Bader; Anantharaman Kalyanaraman (SC, 2006)

Computational Grand Challenges in Assembling the Tree of Life: Problems and Solutions. - David A. Bader; Usman Roshan; Alexandros Stamatakis (Adv. Comput., 2006)

Fast shared-memory algorithms for computing the minimum spanning forest of sparse graphs. - David A. Bader; Guojing Cong (J. Parallel Distributed Comput., 2006)

Designing irregular parallel algorithms with mutual exclusion and lock-free protocols. - Guojing Cong; David A. Bader (J. Parallel Distributed Comput., 2006)

Editorial: Special Section on High-Performance Computational Biology. - Srinivas Aluru; Nancy M. Amato; David A. Bader (IEEE Trans. Parallel Distributed Syst., 2006)

An Experimental Study of A Parallel Shortest Path Algorithm for Solving Large-Scale Graph Instances. - Kamesh Madduri; David A. Bader; Jonathan W. Berry; Joseph R. Crobak (ALENEX, 2007)

Lecture on Progress toward Petascale Applications in Bioinformatics and Computational Biology. - Craig A. Stewart; Malinda Lingwall; David A. Bader (BIBE, 2007)

FFTC: Fastest Fourier Transform for the IBM Cell Broadband Engine. - David A. Bader; Virat Agarwal (HiPC, 2007)

Symposium Evening Tutorial: High-performance Computing Methods for Computational Genomics. - Srinivas Aluru; David A. Bader; Anantharaman Kalyanaraman (IPDPS, 2007)

Petascale Computing for Large-Scale Graph Problems. - David A. Bader (IPDPS, 2007)

On the Design and Analysis of Irregular Algorithms on the Cell Processor: A Case Study of List Ranking. - David A. Bader; Virat Agarwal; Kamesh Madduri (IPDPS, 2007)

SWARM: A Parallel Programming Framework for Multicore Processors. - David A. Bader; Varun Kanade; Kamesh Madduri (IPDPS, 2007)

DOSA: Design Optimizer for Scientific Applications. - David A. Bader; Viktor K. Prasanna (IPDPS, 2007)

Advanced Shortest Paths Algorithms on a Massively-Multithreaded Architecture. - Joseph R. Crobak; Jonathan W. Berry; Kamesh Madduri; David A. Bader (IPDPS, 2007)

Techniques for Designing Efficient Parallel Graph Algorithms for SMPs and Multicore Processors. - Guojing Cong; David A. Bader (ISPA, 2007)

Approximating Betweenness Centrality. - David A. Bader; Shiva Kintali; Kamesh Madduri; Milena Mihail (WAW, 2007)

On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures. - Diana H. P. Low; Bharadwaj Veeravalli; David A. Bader (J. Parallel Distributed Comput., 2007)

High performance combinatorial algorithm design on the Cell Broadband Engine processor. - David A. Bader; Virat Agarwal; Kamesh Madduri; Seunghwa Kang (Parallel Comput., 2007)

Dynamic Load Balancing in Distributed Systems in the Presence of Delays: A Regeneration-Theory Approach. - Sagar Dhakal; Majeed M. Hayat; Jorge E. Pezoa; Cundong Yang; David A. Bader (IEEE Trans. Parallel Distributed Syst., 2007)

Efficient Parallel Graph Algorithms for Multicore and Multiprocessors. - Guojing Cong; David A. Bader (Handbook of Parallel Computing, 2007)

Design of Multithreaded Algorithms for Combinatorial Problems. - Kamesh Madduri; John Feo; Guojing Cong; David A. Bader (Handbook of Parallel Computing, 2007)

A Prediction Based CMP Cache Migration Policy. - Song Hao; Zhihui Du; David A. Bader; Man Wang (HPCC, 2008)

On the Design of Fast Pseudo-Random Number Generators for the Cell Broadband Engine and an Application to Risk Analysis. - David A. Bader; Aparna Chandramowlishwaran; Virat Agarwal (ICPP, 2008)

Optimizing JPEG2000 Still Image Encoding on the Cell Broadband Engine. - Seunghwa Kang; David A. Bader (ICPP, 2008)

Financial modeling on the cell broadband engine. - Virat Agarwal; Lurng-Kuo Liu; David A. Bader (IPDPS, 2008)

SNAP, Small-world Network Analysis and Partitioning: An open-source parallel graph framework for the exploration of large-scale networks. - David A. Bader; Kamesh Madduri (IPDPS, 2008)

High performance MPEG-2 software decoder on the cell broadband engine. - David A. Bader; Sulabh Patel (IPDPS, 2008)

High-performance computational biology. - David A. Bader; Srinivas Aluru (Parallel Comput., 2008)

A graph-theoretic analysis of the human protein-interaction network using multicore parallel algorithms. - David A. Bader; Kamesh Madduri (Parallel Comput., 2008)

Engineering Algorithms for Computational Biology. - David A. Bader (Encyclopedia of Algorithms, 2008)

High Performance Algorithm Engineering for Large-scale Problems. - David A. Bader (Encyclopedia of Algorithms, 2008)

Sorting Signed Permutations by Reversal (Reversal Distance). - David A. Bader (Encyclopedia of Algorithms, 2008)

Simulating Individual-Based Models of Epidemics in Hierarchical Networks. - Rick Quax; David A. Bader; Peter M. A. Sloot (ICCS (1), 2009)

A Partition-Merge Based Cache-Conscious Parallel Sorting Algorithm for CMP with Shared Cache. - Song Hao; Zhihui Du; David A. Bader; Yin Ye (ICPP, 2009)

Generalizing k-Betweenness Centrality Using Short Paths and a Parallel Multithreaded Implementation. - Karl Jiang; David Ediger; David A. Bader (ICPP, 2009)

Understanding the design trade-offs among current multicore systems for numerical computations. - Seunghwa Kang; David A. Bader; Richard W. Vuduc (IPDPS, 2009)

Compact graph representations and parallel connectivity algorithms for massive dynamic network analysis. - Kamesh Madduri; David A. Bader (IPDPS, 2009)

A faster parallel algorithm and efficient multithreaded implementations for evaluating betweenness centrality on massive datasets. - Kamesh Madduri; David Ediger; Karl Jiang; David A. Bader; Daniel G. Chavarría-Miranda (IPDPS, 2009)

An efficient transactional memory algorithm for computing minimum spanning forest of sparse graphs. - Seunghwa Kang; David A. Bader (PPoPP, 2009)

GTfold: a scalable multicore code for RNA secondary structure prediction. - Amrita Mathuriya; David A. Bader; Christine E. Heitsch; Stephen C. Harvey (SAC, 2009)

Faster FAST: multicore acceleration of streaming financial data. - Virat Agarwal; David A. Bader; Lin Dan; Lurng-Kuo Liu; Davide Pasetto; Michael Perrone; Fabrizio Petrini (Comput. Sci. Res. Dev., 2009)

Computing discrete transforms on the Cell Broadband Engine. - David A. Bader; Virat Agarwal; Seunghwa Kang (Parallel Comput., 2009)

Designing Fast Fourier Transform for the IBM Cell Broadband Engine. - Virat Agarwal; David A. Bader (Scientific Computing with Multicore and Accelerators, 2010)

Combinatorial Algorithm Design on the Cell/B.E. Processor. - David A. Bader; Virat Agarwal; Kamesh Madduri; Fabrizio Petrini (Scientific Computing with Multicore and Accelerators, 2010)

On accelerating iterative algorithms with CUDA: A case study on Conditional Random Fields training algorithm for biological sequence alignment. - Zhihui Du; Zhaoming Yin; Wenjie Liu; David A. Bader (BIBM Workshops, 2010)

Analyzing Massive Social Networks Using Multicore and Multithreaded Architectures. - David A. Bader (Facing the Multicore-Challenge, 2010)

Massive Social Network Analysis: Mining Twitter for Social Good. - David Ediger; Karl Jiang; E. Jason Riedy; David A. Bader; Courtney D. Corley; Robert M. Farber; William N. Reynolds (ICPP, 2010)

Message from general chair. - David A. Bader (IPDPS, 2010)

A tile-based parallel Viterbi algorithm for biological sequence alignment on GPU with CUDA. - Zhihui Du; Zhaoming Yin; David A. Bader (IPDPS Workshops, 2010)

Massive streaming data analytics: A case study with clustering coefficients. - David Ediger; Karl Jiang; E. Jason Riedy; David A. Bader (IPDPS Workshops, 2010)

Large scale complex network analysis using the hybrid combination of a MapReduce cluster and a highly multithreaded system. - Seunghwa Kang; David A. Bader (IPDPS Workshops, 2010)

Message from the workshop chairs. - George Karypis; Srinivas Aluru; David A. Bader (IPDPS Workshops, 2010)

Evaluating Cell/B.E software cache for ClustalW. - Vipin Sachdeva; Michael Kistler; David A. Bader (ISCAS, 2010)

Scalable Graph Exploration on Multicore Processors. - Virat Agarwal; Fabrizio Petrini; Davide Pasetto; David A. Bader (SC, 2010)

Large-Scale Network Analysis. - David A. Bader; Christine E. Heitsch; Kamesh Madduri (Graph Algorithms in the Language of Linear Algebra, 2011)

Fundamental Questions in the Analysis of Large Graphs. - Jeremy Kepner; David A. Bader; Robert Bond; Nadya T. Bliss; Christos Faloutsos; Bruce Hendrickson; John R. Gilbert; Eric Robinson (Graph Algorithms in the Language of Linear Algebra, 2011)

Tracking Structure of Streaming Social Networks. - David Ediger; E. Jason Riedy; David A. Bader; Henning Meyerhenke (IPDPS Workshops, 2011)

HiCOMB Introduction. - Ananth Kalyanaraman; Srinivas Aluru; David A. Bader (IPDPS Workshops, 2011)

A Waterfall Model to Achieve Energy Efficient Tasks Mapping for Large Scale GPU Clusters. - Wenjie Liu; Zhihui Du; Yu Xiao; David A. Bader; Chen Xu (IPDPS Workshops, 2011)

On the random access performance of Cell Broadband Engine with graph analysis application - Mingyu Chen 001; David A. Bader; Seunghwa Kang (CoRR, 2011)

Algorithm Engineering Challenges in Multicore and Manycore Systems. - Seunghwa Kang; David Ediger; David A. Bader (it Inf. Technol., 2011)

Guest Editor's Introduction: Special Issue on High-Performance Computing with Accelerators. - David A. Bader; David R. Kaeli; Volodymyr V. Kindratenko (IEEE Trans. Parallel Distributed Syst., 2011)

Graph Algorithms. - David A. Bader; Guojing Cong (Encyclopedia of Parallel Computing, 2011)

Spanning Tree, Minimum Weight. - David A. Bader; Guojing Cong (Encyclopedia of Parallel Computing, 2011)

SWARM: A Parallel Programming Framework for Multicore Processors. - David A. Bader; Guojing Cong (Encyclopedia of Parallel Computing, 2011)

Hybrid Programming With SIMPLE. - Guojing Cong; David A. Bader (Encyclopedia of Parallel Computing, 2011)

Parallel community detection for massive graphs. - E. Jason Riedy; Henning Meyerhenke; David Ediger; David A. Bader (Graph Partitioning and Graph Clustering, 2012)

Task-based parallel breadth-first search in heterogeneous environments. - Lluís-Miquel Munguía; David A. Bader; Eduard Ayguadé (HiPC, 2012)

STINGER: High performance data structure for streaming graphs. - David Ediger; Robert McColl; E. Jason Riedy; David A. Bader (HPEC, 2012)

Analysis of streaming social networks and graphs on multicore architectures. - E. Jason Riedy; Henning Meyerhenke; David A. Bader; David Ediger; Timothy G. Mattson (ICASSP, 2012)

GPU merge path: a GPU merging algorithm. - Oded Green; Robert McColl; David A. Bader (ICS, 2012)

HCW 2012 Keynote Talk: Analyzing massive data using heterogeneous computing. - David A. Bader (IPDPS Workshops, 2012)

HiCOMB Introduction. - Mark J. Clement; Quinn Snell; Srinivas Aluru; David A. Bader (IPDPS Workshops, 2012)

Scalable Multi-threaded Community Detection in Social Networks. - E. Jason Riedy; David A. Bader; Henning Meyerhenke (IPDPS Workshops, 2012)

Enhancing Cache Coherent Architectures with access patterns for embedded manycore systems. - Jussara Marandola; Stéphane Louise; Loïc Cudennec; Jean-Thomas Acquaviva; David A. Bader (ISSoC, 2012)

A Fast Algorithm for Streaming Betweenness Centrality. - Oded Green; Robert McColl; David A. Bader (SocialCom/PASSAT, 2012)

ACM journal on experimental algorithmics special issue on multicore algorithms. - David A. Bader; Philippas Tsigas (ACM J. Exp. Algorithmics, 2012)

Efficient Data Migration to Conserve Energy in Streaming Media Storage Systems. - Yunpeng Chai; Zhihui Du; David A. Bader; Xiao Qin 001 (IEEE Trans. Parallel Distributed Syst., 2012)

A statistical framework for streaming graph analysis. - James P. Fairbanks; David Ediger; Robert McColl; David A. Bader; Eric Gilbert (ASONAM, 2013)

A new parallel algorithm for connected components in dynamic graphs. - Robert McColl; Oded Green; David A. Bader (HiPC, 2013)

Standards for graph algorithm primitives. - Tim Mattson; David A. Bader; Jonathan W. Berry; Aydin Buluç; Jack J. Dongarra; Christos Faloutsos; John Feo; John R. Gilbert; Joseph Gonzalez 001; Bruce Hendrickson; Jeremy Kepner; Charles E. Leiserson; et al. (HPEC, 2013)

Faster Betweenness Centrality Based on Data Structure Experimentation. - Oded Green; David A. Bader (ICCS, 2013)

Streaming Breakpoint Graph Analytics for Accelerating and Parallelizing the Computation of DCJ Median of Three Genomes. - Zhaoming Yin; Jijun Tang; Stephen W. Schaeffer; David A. Bader (ICCS, 2013)

Energy-Efficient Scheduling for Best-Effort Interactive Services to Achieve High Response Quality. - Zhihui Du; Hongyang Sun 001; Yuxiong He; Yu He; David A. Bader; Huazhe Zhang (IPDPS, 2013)

Investigating Graph Algorithms in the BSP Model on the Cray XMT. - David Ediger; David A. Bader (IPDPS Workshops, 2013)

Designing Hybrid Architectures for Massive-Scale Graph Analysis. - David Ediger; David A. Bader (IPDPS Workshops, 2013)

Multithreaded Community Monitoring for Massive Streaming Graph Data. - E. Jason Riedy; David A. Bader (IPDPS Workshops, 2013)

HiCOMB Introduction. - Jaroslaw Zola; David A. Bader; Srinivas Aluru (IPDPS Workshops, 2013)

Detecting insider threats in a real corporate database of computer usage activity. - Ted E. Senator; Henry G. Goldberg; Alex Memory; William T. Young; Brad Rees; Robert Pierce; Daniel Huang 003; Matthew Reardon; David A. Bader; Edmond Chow; Irfan A. Essa; Joshua Jones; et al. (KDD, 2013)

Measuring the Sensitivity of Graph Metrics to Missing Data. - Anita Zakrzewska; David A. Bader (PPAM (1), 2013)

Faster Clustering Coefficient Using Vertex Covers. - Oded Green; David A. Bader (SocialCom, 2013)

A Brief Study of Open Source Graph Databases. - Robert McColl; David Ediger; Jason Poovey; Dan Campbell; David A. Bader (CoRR, 2013)

Sustainable Software Development for Next-Gen Sequencing (NGS) Bioinformatics on Emerging Platforms. - Shel Swenson; Yogesh Simmhan; Viktor K. Prasanna; Manish Parashar; E. Jason Riedy; David A. Bader; Richard W. Vuduc (CoRR, 2013)

Massive streaming data analytics: a graph-based approach. - E. Jason Riedy; David A. Bader (XRDS, 2013)

GraphCT: Multithreaded Algorithms for Massive Graph Analysis. - David Ediger; Karl Jiang; E. Jason Riedy; David A. Bader (IEEE Trans. Parallel Distributed Syst., 2013)

PASQUAL: Parallel Techniques for Next Generation Genome Sequence Assembly. - Xing Liu; Pushkar R. Pande; Henning Meyerhenke; David A. Bader (IEEE Trans. Parallel Distributed Syst., 2013)

A Lin-Kernighan Heuristic for the DCJ Median Problem of Genomes with Unequal Contents. - Zhaoming Yin; Jijun Tang; Stephen W. Schaeffer; David A. Bader (COCOON, 2014)

Optimizing energy consumption and parallel performance for static and dynamic betweenness centrality using GPUs. - Adam McLaughlin; E. Jason Riedy; David A. Bader (HPEC, 2014)

Designing a Heuristic Cross-Architecture Combination for Breadth-First Search. - Yang You 001; David A. Bader; Maryam Mehri Dehnavi (ICPP, 2014)

GABB Introduction. - Tim Mattson; David A. Bader; Aydin Buluç; John R. Gilbert; Joseph Gonzalez 001; Jeremy Kepner (IPDPS Workshops, 2014)

Revisiting Edge and Node Parallelism for Dynamic GPU Graph Analytics. - Adam McLaughlin; David A. Bader (IPDPS Workshops, 2014)

HiCOMB Introduction and Committees. - Alba Cristina Magalhaes Alves de Melo; Srinivas Aluru; David A. Bader (IPDPS Workshops, 2014)

Load balanced clustering coefficients. - Oded Green; Lluís-Miquel Munguía; David A. Bader (PPAA@PPoPP, 2014)

A performance evaluation of open source graph databases. - Robert Campbell McColl; David Ediger; Jason Poovey; Dan Campbell; David A. Bader (PPAA@PPoPP, 2014)

Scalable and High Performance Betweenness Centrality on the GPU. - Adam McLaughlin; David A. Bader (SC, 2014)

Introduction to Special Issue ALENEX'12. - David A. Bader; Petra Mutzel (ACM J. Exp. Algorithmics, 2014)

State of the Journal. - David A. Bader (IEEE Trans. Parallel Distributed Syst., 2014)

Benchmarking for Graph Clustering and Partitioning. - David A. Bader; Henning Meyerhenke; Peter Sanders 001; Christian Schulz 003; Andrea Kappes; Dorothea Wagner (Encyclopedia of Social Network Analysis and Mining, 2014)

Parallel Methods for Verifying the Consistency of Weakly-Ordered Architectures. - Adam McLaughlin; Duane Merrill; Michael Garland; David A. Bader (PACT, 2015)

A Dynamic Algorithm for Local Community Detection in Graphs. - Anita Zakrzewska; David A. Bader (ASONAM, 2015)

A fast, energy-efficient abstraction for simultaneous breadth-first searches. - Adam McLaughlin; E. Jason Riedy; David A. Bader (HPEC, 2015)

Graphs, Matrices, and the GraphBLAS: Seven Good Reasons. - Jeremy Kepner; David A. Bader; Aydin Buluç; John R. Gilbert; Timothy G. Mattson; Henning Meyerhenke (ICCS, 2015)

Fast Execution of Simultaneous Breadth-First Searches on Sparse Graphs. - Adam McLaughlin; David A. Bader (ICPADS, 2015)

ParLearning Keynotes. - David A. Bader; Yihua Huang; Ananth Kalyanaraman (IPDPS Workshops, 2015)

A Methodology for Co-Location Aware Application Performance Modeling in Multicore Computing. - Daniel Dauwe; Eric Jonardi; Ryan D. Friese; Sudeep Pasricha; Anthony A. Maciejewski; David A. Bader; Howard Jay Siegel (IPDPS Workshops, 2015)

HiCOMB Introduction and Committees. - Sanguthevar Rajasekaran; Srinivas Aluru; David A. Bader (IPDPS Workshops, 2015)

Fast Incremental Community Detection on Dynamic Graphs. - Anita Zakrzewska; David A. Bader (PPAM (1), 2015)

Behavioral clusters in dynamic graphs. - James P. Fairbanks; Ramakrishnan Kannan; Haesun Park; David A. Bader (Parallel Comput., 2015)

WEC: Improving Durability of SSD Cache Drives by Caching Write-Efficient Data. - Yunpeng Chai; Zhihui Du; Xiao Qin 001; David A. Bader (IEEE Trans. Computers, 2015)

New stopping criteria for spectral partitioning. - James P. Fairbanks; Anita Zakrzewska; David A. Bader (ASONAM, 2016)

Aging data in dynamic graphs: A comparative study. - Anita Zakrzewska; David A. Bader (ASONAM, 2016)

A local measure of community change in dynamic graphs. - Anita Zakrzewska; Eisha Nathan; James P. Fairbanks; David A. Bader (ASONAM, 2016)

cuSTINGER: Supporting dynamic graph algorithms for GPUs. - Oded Green; David A. Bader (HPEC, 2016)

Mathematical foundations of the GraphBLAS. - Jeremy Kepner; Peter Aaltonen; David A. Bader; Aydin Buluç; Franz Franchetti; John R. Gilbert; Dylan Hutchison; Manoj Kumar 006; Andrew Lumsdaine; Henning Meyerhenke; Scott McMillan; Carl Yang 002; et al. (HPEC, 2016)

HiCOMB Introduction and Committees. - Srinivas Aluru; David A. Bader; Ananth Kalyanaraman; Jaroslaw Zola (IPDPS Workshops, 2016)

GABB 2016 Keynote. - David A. Bader (IPDPS Workshops, 2016)

A Memory and Time Scalable Parallelization of the Reptile Error-Correction Code. - Vipin Sachdeva; Srinivas Aluru; David A. Bader (IPDPS Workshops, 2016)

Evolving MPI+X Toward Exascale. - David A. Bader (Computer, 2016)

Exemplar or matching: modeling DCJ problems with unequal content genome data. - Zhaoming Yin; Jijun Tang; Stephen W. Schaeffer; David A. Bader (J. Comb. Optim., 2016)

Tracking local communities in streaming graphs with a dynamic algorithm. - Anita Zakrzewska; David A. Bader (Soc. Netw. Anal. Min., 2016)

A New Parallel Method for Binary Black Hole Simulations. - Quan Yang; Zhihui Du; Zhou-Jian Cao; Jian Tao; David A. Bader (Sci. Program., 2016)

HPC node performance and energy modeling with the co-location of applications. - Daniel Dauwe; Eric Jonardi; Ryan D. Friese; Sudeep Pasricha; Anthony A. Maciejewski; David A. Bader; Howard Jay Siegel (J. Supercomput., 2016)

Engineering Algorithms for Computational Biology. - David A. Bader (Encyclopedia of Algorithms, 2016)

High Performance Algorithm Engineering for Large-Scale Problems. - David A. Bader (Encyclopedia of Algorithms, 2016)

Sorting Signed Permutations by Reversal (Reversal Distance). - David A. Bader (Encyclopedia of Algorithms, 2016)

A Dynamic Algorithm for Updating Katz Centrality in Graphs. - Eisha Nathan; David A. Bader (ASONAM, 2017)

Streaming Graph Sampling with Size Restrictions. - Anita Zakrzewska; David A. Bader (ASONAM, 2017)

Ranking in Dynamic Graphs Using Exponential Centrality. - Eisha Nathan; James P. Fairbanks; David A. Bader (COMPLEX NETWORKS, 2017)

Exact and Parallel Triangle Counting in Dynamic Graphs. - Devavret Makkar; David A. Bader; Oded Green (HiPC, 2017)

Quickly finding a truss in a haystack. - Oded Green; James Fox; Euna Kim; Federico Busato; Nicola Bombieri; Kartik Lakhotia; Shijie Zhou 001; Shreyas G. Singapura; Hanqing Zeng; Rajgopal Kannan; Viktor K. Prasanna; David A. Bader (HPEC, 2017)

Design and implementation of parallel PageRank on multicore platforms. - Shijie Zhou 001; Kartik Lakhotia; Shreyas G. Singapura; Hanqing Zeng; Rajgopal Kannan; Viktor K. Prasanna; James Fox; Euna Kim; Oded Green; David A. Bader (HPEC, 2017)

Graph Ranking Guarantees for Numerical Approximations to Katz Centrality. - Eisha Nathan; Geoffrey Sanders; James P. Fairbanks; Van Emden Henson; David A. Bader (ICCS, 2017)

Introduction to EMBRACE Workshop. - David A. Bader (IPDPS Workshops, 2017)

When Good Enough Is Better: Energy-Aware Scheduling for Multicore Servers. - Xinning Hui; Zhihui Du; Jason Liu 001; Hongyang Sun 001; Yuxiong He; David A. Bader (IPDPS Workshops, 2017)

Approximating Personalized Katz Centrality in Dynamic Graphs. - Eisha Nathan; David A. Bader (PPAM (1), 2017)

Local Community Detection in Dynamic Graphs Using Personalized Centrality. - Eisha Nathan; Anita Zakrzewska; E. Jason Riedy; David A. Bader (Algorithms, 2017)

Spectral partitioning with blends of eigenvectors. - James P. Fairbanks; David A. Bader; Geoffrey D. Sanders (J. Complex Networks, 2017)

A parallel local search framework for the Fixed-Charge Multicommodity Network Flow problem. - Lluís-Miquel Munguía; Shabbir Ahmed 001; David A. Bader; George L. Nemhauser; Vikas Goel; Yufen Shao (Comput. Oper. Res., 2017)

Designing and implementing a heuristic cross-architecture combination for graph traversal. - Yang You 001; Haohuan Fu; David A. Bader; Guangwen Yang (J. Parallel Distributed Comput., 2017)

Modeling the Power Variability of Core Speed Scaling on Homogeneous Multicore Systems. - Zhihui Du; Rong Ge 002; Victor W. Lee; Richard W. Vuduc; David A. Bader; Ligang He (Sci. Program., 2017)

Editor's Note. - David A. Bader (IEEE Trans. Parallel Distributed Syst., 2017)

Hornet: An Efficient Data Structure for Dynamic Sparse Graphs and Matrices on GPUs. - Federico Busato; Oded Green; Nicola Bombieri; David A. Bader (HPEC, 2018)

Fast and Adaptive List Intersections on the GPU. - James Fox; Oded Green; Kasimir Gabert; Xiaojing An; David A. Bader (HPEC, 2018)

Logarithmic Radix Binning and Vectorized Triangle Counting. - Oded Green; James Fox; Alex Watkins; Alok Tripathy; Kasimir Gabert; Euna Kim; Xiaojing An; Kumar Aatish; David A. Bader (HPEC, 2018)

Introduction to HiCOMB 2018. - Srinivas Aluru; David A. Bader; Paul Medvedev (IPDPS Workshops, 2018)

Massive-scale Streaming Analytics: Models, Parallelism, & Real-world Applications. - David A. Bader (SPAA, 2018)

Accelerating GPU betweenness centrality. - Adam McLaughlin; David A. Bader (Commun. ACM, 2018)

Alternating criteria search: a parallel large neighborhood search algorithm for mixed integer programs. - Lluís-Miquel Munguía; Shabbir Ahmed 001; David A. Bader; George L. Nemhauser; Yufen Shao (Comput. Optim. Appl., 2018)

Numerically approximating centrality for graph ranking guarantees. - Eisha Nathan; Geoffrey Sanders; Van Emden Henson; David A. Bader (J. Comput. Sci., 2018)

Incrementally updating Katz centrality in dynamic graphs. - Eisha Nathan; David A. Bader (Soc. Netw. Anal. Min., 2018)

Benchmarking for Graph Clustering and Partitioning. - David A. Bader; Andrea Kappes; Henning Meyerhenke; Peter Sanders 001; Christian Schulz 003; Dorothea Wagner (Encyclopedia of Social Network Analysis and Mining. 2nd Ed., 2018)

Skip the Intersection: Quickly Counting Common Neighbors on Shared-Memory Systems. - Xiaojing An; Kasimir Gabert; James Fox; Oded Green; David A. Bader (HPEC, 2019)

Performance Impact of Memory Channels on Sparse and Irregular Algorithms. - Oded Green; James Fox; Jeffrey Young 001; Jun Shirako; David A. Bader (IA3@SC, 2019)

Tailoring parallel alternating criteria search for domain specific MIPs: Application to maritime inventory routing. - Lluís-Miquel Munguía; Shabbir Ahmed 001; David A. Bader; George L. Nemhauser; Yufen Shao; Dimitri J. Papageorgiou (Comput. Oper. Res., 2019)

A Linear Time Algorithm for Finding Minimum Spanning Tree Replacement Edges. - David A. Bader; Paul Burkhardt (CoRR, 2019)

Editorial from the Editor-in-Chief. - David A. Bader (ACM Trans. Parallel Comput., 2019)

An Efficient LP Rounding Scheme for Replica Placement. - Zhihui Du; Sen Zhang 007; David A. Bader; Jingkun Hu (HPEC, 2020)

Using RAPIDS AI to Accelerate Graph Data Science Workflows. - Todd Hricik; David A. Bader; Oded Green (HPEC, 2020)

GPU Accelerated Anomaly Detection of Large Scale Light Curves. - Austin Chase Minor; Zhihui Du; Yankui Sun; David A. Bader; Chao Wu; Jianyan Wei (HPEC, 2020)

QoS-Aware and Fault-Tolerant Replica Placement. - Jingkun Hu; Zhihui Du; Sen Zhang 007; David A. Bader (ICA3PP (2), 2020)

Accelerating and Expanding End-to-End Data Science Workflows with DL/ML Interoperability Using RAPIDS. - Bartley Richardson; Bradley Rees; Tom Drabas; Even Oldridge; David A. Bader; Rachel Allen (KDD, 2020)

Traversing Large Graphs on GPUs with Unified Memory. - Prasun Gera; Hyojong Kim; Piyush Sao; Hyesoon Kim; David A. Bader (Proc. VLDB Endow., 2020)

Interactive data science at scale. - David A. Bader (CF, 2021)

Anti-Section Transitive Closure. - Oded Green; Zhihui Du; Sanyamee Patel; Zehui Xie; Hang Liu; David A. Bader (HiPC, 2021)

Large Scale String Analytics in Arkouda. - Zhihui Du; Oliver Alvarado Rodriguez; David A. Bader (HPEC, 2021)

Enabling Exploratory Large Scale Graph Analytics through Arkouda. - Zhihui Du; Oliver Alvarado Rodriguez; David A. Bader (HPEC, 2021)

A GraphBLAS Implementation of Triangle Centrality. - Fuhuan Li; David A. Bader (HPEC, 2021)

LAGraph: Linear Algebra, Network Analysis Libraries, and the Study of Graph Algorithms. - Gábor Szárnyas; David A. Bader; Timothy A. Davis 001; James Kitchen; Timothy G. Mattson; Scott McMillan; Erik Welch (IPDPS Workshops, 2021)

Interactive Graph Stream Analytics in Arkouda. - Zhihui Du; Oliver Alvarado Rodriguez; Joseph Patchett; David A. Bader (Algorithms, 2021)

Linux and Supercomputing: How My Passion for Building COTS Systems Led to an HPC Revolution. - David A. Bader (IEEE Ann. Hist. Comput., 2021)

Interactive Graph Analytics at Scale in Arkouda. - Zhihui Du; Oliver Alvarado Rodriguez; Joseph Patchett; David A. Bader (Massive Graph Analytics, 2022)

Introduction to GraphBLAS. - Jeremy Kepner; Peter Aaltonen; David A. Bader; Aydin Buluç; Franz Franchetti; John Gilbert 001; Shana Hutchison; Manoj Kumar 006; Andrew Lumsdaine; Henning Meyerhenke; Scott McMillan; José E. Moreira; et al. (Massive Graph Analytics, 2022)

High-Performance Truss Analytics in Arkouda. - Zhihui Du; Joseph Patchett; Oliver Alvarado Rodriguez; Fuhuan Li; David A. Bader (HIPC, 2022)

Parallel Suffix Sorting for Large String Analytics. - Zhihui Du; Sen Zhang 007; David A. Bader (PPAM (1), 2022)

A Novel Parallel Triangle Counting Algorithm with Reduced Communication. - David A. Bader; Fuhuan Li; Anya Ganeshan; Ahmet Gündogdu; Jason Lew; Oliver Alvarado Rodriguez; Zhihui Du (CoRR, 2022)

Unprecedented cloud resolution in a GPU-enabled full-physics atmospheric climate simulation on OLCF's summit supercomputer. - Matthew R. Norman; David A. Bader; Christopher Eldred; Walter M. Hannah; Benjamin R. Hillman; Christopher R. Jones; Jungmin M. Lee; L. Ruby Leung; Isaac Lyngaas; Kyle G. Pressel; Sarat Sreepathi; Mark A. Taylor; et al. (Int. J. High Perform. Comput. Appl., 2022)

Scalable Katz Ranking Computation in Large Static and Dynamic Graphs. - Alexander van der Grinten; Elisabetta Bergamini; Oded Green; David A. Bader; Henning Meyerhenke (ACM J. Exp. Algorithmics, 2022)

A Simple and Efficient Algorithm for Finding Minimum Spanning Tree Replacement Edges. - David A. Bader; Paul Burkhardt (J. Graph Algorithms Appl., 2022)

Contour Algorithm for Connectivity. - Zhihui Du; Oliver Alvarado Rodriguez; Fuhuan Li; Mohammad Dindoost; David A. Bader (HiPC, 2023)

Fast Triangle Counting. - David A. Bader (HPEC, 2023)

Triangle Counting Through Cover-Edges. - David A. Bader; Fuhuan Li; Anya Ganeshan; Ahmet Gündogdu; Jason Lew; Oliver Alvarado Rodriguez; Zhihui Du (HPEC, 2023)

Property Graphs in Arachne. - Oliver Alvarado Rodriguez; Fernando Vera Buschmann; Zhihui Du; David A. Bader (HPEC, 2023)

Parallel Longest Common SubSequence Analysis In Chapel. - Soroush Vahidi; Baruch Schieber; Zhihui Du; David A. Bader (HPEC, 2023)

Parallel Triangles and Squares Count for Multigraphs Using Vertex Covers. - Luca Cappelletti; Tommaso Fontana; Oded Green; David A. Bader (ICCS (4), 2023)

Billion-scale Detection of Isomorphic Nodes. - Luca Cappelletti; Tommaso Fontana; Justin T. Reese; David A. Bader (IPDPS Workshops, 2023)

Dynamics signature based anomaly detection. - Ivan Hendy Goenawan; Zhihui Du; Chao Wu; Yankui Sun; Jianyan Wei; David A. Bader (Softw. Pract. Exp., 2023)

Anomaly Detection in Catalog Streams. - Chen Yang 009; Zhihui Du; Xiaofeng Meng 001; Xukang Zhang; Xinli Hao; David A. Bader (IEEE Trans. Big Data, 2023)

Tunnel: Parallel-inducing sort for large string analytics. - Zhihui Du; Sen Zhang 007; David A. Bader (Future Gener. Comput. Syst., 2023)

Enhanced Knowledge Graph Attention Networks for Efficient Graph Learning. - Fernando Vera Buschmann; Zhihui Du; David A. Bader (HPEC, 2024)

VF2-PS: Parallel and Scalable Subgraph Monomorphism in Arachne. - Mohammad Dindoost; Oliver Alvarado Rodriguez; Sounak Bagchi; Palina Pauliuchenka; Zhihui Du; David A. Bader (HPEC, 2024)

A Deployment Tool for Large Scale Graph Analytics Framework Arachne. - Garrett Gonzalez-Rivas; Zhihui Du; David A. Bader (HPEC, 2024)

Graph-Based Profiling of Dependency Vulnerability Remediation. - Fernando Vera Buschmann; Palina Pauliuchenka; Ethan Oh; Bai Chien Kao; Louis DiValentin; David A. Bader (SciSec, 2024)

Cover Edge-Based Novel Triangle Counting. - David A. Bader; Fuhuan Li; Zhihui Du; Palina Pauliuchenka; Oliver Alvarado Rodriguez; Anant Gupta; Sai Sri Vastav Minnal; Valmik Nahata; Anya Ganeshan; Ahmet Gündogdu; Jason Lew (CoRR, 2024)

Profile of Vulnerability Remediations in Dependencies Using Graph Analysis. - Fernando Vera; Palina Pauliuchenka; Ethan Oh; Bai Chien Kao; Louis DiValentin; David A. Bader (CoRR, 2024)

Wedge-Parallel Triangle Counting for GPUs. - Jeffrey Spaan; Kuan-Hsun Chen; David A. Bader; Ana Lucia Varbanescu (Euro-Par (3), 2025)

HiPerMotif: Novel Parallel Subgraph Isomorphism in Large-Scale Property Graphs. - Mohammad Dindoost; Oliver Alvarado Rodriguez; Bartosz Bryg; Ioannis Koutis; David A. Bader (CoRR, 2025)

Evaluating Efficiency and Novelty of LLM-Generated Code for Graph Analysis. - Atieh Barati Nia; Mohammad Dindoost; David A. Bader (CoRR, 2025)

Designing Parallel Algorithms for Community Detection using Arachne. - Fuhuan Li; Zhihui Du; David A. Bader (CoRR, 2025)

Rocket-crane algorithm for the Feedback Arc Set problem. - David A. Bader; Justin Ellis-Joyce; Gert-Jan Both; Srinivas C. Turaga; Harinarayan Asoori Sriram; Srijith Chinthalapudi; Zhihui Du (Soc. Netw. Anal. Min., 2025)