Implementation of 3D spatial indexing and compression in a large-scale molecular dynamics simulation database for rapid atomic contact detection. - Rudesh D. Toofanny; Andrew M. Simms; David A. C. Beck; Valerie Daggett (BMC Bioinform., 2011)

Application of machine learning to pyrolysis reaction networks: Reducing model solution time to enable process optimization. - Blake R. Hough; David A. C. Beck; Daniel T. Schwartz; Jim Pfaendtner (Comput. Chem. Eng., 2017)

Mass-Suite: a novel open-source python package for high-resolution mass spectrometry data analysis. - Ximin Hu; Derek Mar; Nozomi Suzuki; Bowei Zhang; Katherine T. Peter; David A. C. Beck; Edward P. Kolodziej (J. Cheminformatics, 2023)