TreeSAAP: Selection on Amino Acid Properties using phylogenetic trees. - Steve Woolley; Justin Johnson 002; Matthew J. Smith; Keith A. Crandall; David A. McClellan (Bioinform., 2003)

DNA reference alignment benchmarks based on tertiary structure of encoded proteins. - Hyrum Carroll; Wesley A. Beckstead; Timothy O'Connor; Mark T. W. Ebbert; Mark J. Clement; Quinn Snell; David A. McClellan (Bioinform., 2007)

Molecular coevolution of the vertebrate cytochrome c. - Kimberly K. Baer; David A. McClellan (Int. J. Bioinform. Res. Appl., 2007)

Evolutionary selective pressure on three mitochondrial SNPs is consistent with their influence on metabolic efficiency in Pima Indians. - Srikar Chamala; Wesley A. Beckstead; Mark J. Rowe; David A. McClellan (Int. J. Bioinform. Res. Appl., 2007)

Pharmacogenomics: analysing SNPs in the CYP2D6 gene using amino acid properties. - Mark T. W. Ebbert; Wesley A. Beckstead; Timothy O'Connor; Mark J. Clement; David A. McClellan (Int. J. Bioinform. Res. Appl., 2007)

ChemAlign: Biologically Relevant Multiple Sequence Alignment Using Physicochemical Properties. - Hyrum Carroll; Mark J. Clement; Quinn Snell; David A. McClellan (BIBM, 2009)

Assessing and improving the accuracy of detecting protein adaptation with the TreeSAAP analytical software. - David A. McClellan; David D. Ellison (Int. J. Bioinform. Res. Appl., 2010)

Detecting molecular selection on single amino acid replacements. - David A. McClellan (Int. J. Bioinform. Res. Appl., 2012)

Directional Darwinian Selection in proteins. - David A. McClellan (BMC Bioinform., 2013)