Comparative proteomics: assessment of biological variability and dataset comparability. - Sa Kim; Tuong Nguyen; Na Seo; Seunghup Jung; Hyun An; David A. Mills; Jae Kim (BMC Bioinform., 2015)

SAMSA: a comprehensive metatranscriptome analysis pipeline. - Samuel T. Westreich; Ian Korf; David A. Mills; Danielle G. Lemay (BMC Bioinform., 2016)

SAMSA2: a standalone metatranscriptome analysis pipeline. - Samuel T. Westreich; Michelle L. Treiber; David A. Mills; Ian Korf; Danielle G. Lemay (BMC Bioinform., 2018)

Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomes. - Michelle L. Treiber; Diana H. Taft; Ian Korf; David A. Mills; Danielle G. Lemay (BMC Bioinform., 2020)