Learning Local Error Bars for Nonlinear Regression. - David A. Nix; Andreas S. Weigend (NIPS, 1994)

Maximum-Likelihood Continuity Mapping (MALCOM): An Alternative to HMMs. - David A. Nix; John E. Hogden (NIPS, 1998)

GATA: a graphic alignment tool for comparative sequence analysis. - David A. Nix; Michael B. Eisen (BMC Bioinform., 2005)

Large-Scale Turnover of Functional Transcription Factor Binding Sites in Drosophila. - Alan M. Moses; Daniel A. Pollard; David A. Nix; Venky N. Iyer; Xiaoyong Li; Mark D. Biggin; Michael B. Eisen (PLoS Comput. Biol., 2006)

Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks. - David A. Nix; Samir J. Courdy; Kenneth M. Boucher (BMC Bioinform., 2008)

Next generation tools for genomic data generation, distribution, and visualization. - David A. Nix; Tonya L. Di Sera; Brian K. Dalley; Brett A. Milash; Robert M. Cundick; Kevin S. Quinn; Samir J. Courdy (BMC Bioinform., 2010)