Inference for Nonlinear Epidemiological Models Using Genealogies and Time Series. - David A. Rasmussen; Oliver Ratmann; Katia Koelle (PLoS Comput. Biol., 2011)

Phylodynamic Inference for Structured Epidemiological Models. - David A. Rasmussen; Erik M. Volz; Katia Koelle (PLoS Comput. Biol., 2014)

Phylodynamics on local sexual contact networks. - David A. Rasmussen; Roger D. Kouyos; Huldrych F. Günthard; Tanja Stadler (PLoS Comput. Biol., 2017)

MASCOT: parameter and state inference under the marginal structured coalescent approximation. - Nicola F. Müller; David A. Rasmussen; Tanja Stadler (Bioinform., 2018)

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. - Remco R. Bouckaert; Timothy G. Vaughan; Joëlle Barido-Sottani; Sebastián Duchêne; Mathieu Fourment; Alexandra Gavryushkina; Joseph Heled; Graham Jones; Denise Kühnert; Nicola De Maio; Michael Matschiner; Fábio K. Mendes; et al. (PLoS Comput. Biol., 2019)

Recombination-aware phylogeographic inference using the structured coalescent with ancestral recombination. - Fangfang Guo; Ignazio Carbone; David A. Rasmussen (PLoS Comput. Biol., 2022)