Dynamic cellular automata: a simple but powerful approach to cellular simulation. - David S. Wishart; Robert Yang; David Arndt; Peter Tang; Joseph A. Cruz (Silico Biol., 2004)

HMDB: the Human Metabolome Database. - David S. Wishart; Dan Tzur; Craig Knox; Roman Eisner; Anchi Guo; Nelson Young; Dean Cheng; Kevin Jewell; David Arndt; Summit Sawhney; Chris Fung; Lisa Nikolai; et al. (Nucleic Acids Res., 2007)

Protein contact order prediction from primary sequences. - Yi Shi 005; Jianjun Zhou; David Arndt; David S. Wishart; Guohui Lin (BMC Bioinform., 2008)

PROTEUS2: a web server for comprehensive protein structure prediction and structure-based annotation. - Scott Montgomerie; Joseph A. Cruz; Savita Shrivastava; David Arndt; Mark V. Berjanskii; David S. Wishart (Nucleic Acids Res., 2008)

PPT-DB: the protein property prediction and testing database. - David S. Wishart; David Arndt; Mark V. Berjanskii; Anchi Guo; Yi Shi 005; Savita Shrivastava; Jianjun Zhou; You Zhou; Guohui Lin (Nucleic Acids Res., 2008)

CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data. - David S. Wishart; David Arndt; Mark V. Berjanskii; Peter Tang; Jianjun Zhou; Guohui Lin (Nucleic Acids Res., 2008)

METAGENassist: a comprehensive web server for comparative metagenomics. - David Arndt; Jianguo Xia; Yifeng Liu 001; You Zhou; Anchi Guo; Joseph A. Cruz; Igor Sinelnikov; Karen Budwill; Camilla L. Nesbø; David S. Wishart (Nucleic Acids Res., 2012)

HMDB 3.0 - The Human Metabolome Database in 2013. - David S. Wishart; Timothy Jewison; Anchi Guo; Michael Wilson 002; Craig Knox; Yifeng Liu 001; Yannick Djoumbou; Rupasri Mandal; Farid Aziat; Edison Dong; Souhaila Bouatra; Igor Sinelnikov; et al. (Nucleic Acids Res., 2013)

SMPDB 2.0: Big Improvements to the Small Molecule Pathway Database. - Timothy Jewison; Yilu Su; Fatemeh Miri Disfany; Yongjie Liang; Craig Knox; Adam Maciejewski; Jenna Poelzer; Jessica Huynh; You Zhou; David Arndt; Yannick Djoumbou; Yifeng Liu 001; et al. (Nucleic Acids Res., 2014)

DrugBank 4.0: shedding new light on drug metabolism. - Vivian Law; Craig Knox; Yannick Djoumbou; Timothy Jewison; Anchi Guo; Yifeng Liu 001; Adam Maciejewski; David Arndt; Michael Wilson 002; Vanessa Neveu; Alexandra Tang; Geraldine Gabriel; et al. (Nucleic Acids Res., 2014)

CSI 3.0: a web server for identifying secondary and super-secondary structure in proteins using NMR chemical shifts. - Noor E. Hafsa; David Arndt; David S. Wishart (Nucleic Acids Res., 2015)

T3DB: the toxic exposome database. - David S. Wishart; David Arndt; Allison Pon; Tanvir Sajed; Anchi Guo; Yannick Djoumbou; Craig Knox; Michael Wilson 002; Yongjie Liang; Jason R. Grant; Yifeng Liu 001; Seyed Ali Goldansaz; et al. (Nucleic Acids Res., 2015)

PHASTER: a better, faster version of the PHAST phage search tool. - David Arndt; Jason R. Grant; Ana Marcu; Tanvir Sajed; Allison Pon; Yongjie Liang; David S. Wishart (Nucleic Acids Res., 2016)

Heatmapper: web-enabled heat mapping for all. - Sasha Babicki; David Arndt; Ana Marcu; Yongjie Liang; Jason R. Grant; Adam Maciejewski; David S. Wishart (Nucleic Acids Res., 2016)

YMDB 2.0: a significantly expanded version of the yeast metabolome database. - Miguel Ramirez-Gaona; Ana Marcu; Allison Pon; An Chi Guo; Tanvir Sajed; Noah A. Wishart; Naama Karu; Yannick Djoumbou Feunang; David Arndt; David S. Wishart (Nucleic Acids Res., 2017)

HMDB 4.0: the human metabolome database for 2018. - David S. Wishart; Yannick Djoumbou Feunang; Ana Marcu; An Chi Guo; Kevin Y. H. Liang; Rosa Vázquez-Fresno; Tanvir Sajed; Daniel Johnson; Carin Li; Naama Karu; Zinat Sayeeda; Elvis J. Lo; et al. (Nucleic Acids Res., 2018)

PHAST, PHASTER and PHASTEST: Tools for finding prophage in bacterial genomes. - David Arndt; Ana Marcu; Yongjie Liang; David S. Wishart (Briefings Bioinform., 2019)

HMDB 5.0: the Human Metabolome Database for 2022. - David S. Wishart; Anchi Guo; Eponine Oler; Fei Wang 062; Afia Anjum; Harrison Peters; Raynard Dizon; Zinat Sayeeda; Siyang Tian; Brian L. Lee; Mark V. Berjanskii; Robert Mah; et al. (Nucleic Acids Res., 2022)