Representing Genetic Information with Formal Grammars. - David B. Searls (AAAI, 1988)

Investigating the Linguistics of DNA with Definite Clause Grammars. - David B. Searls (NACLP, 1989)

Logic-Based Configuration with a Semantic Network. - David B. Searls; Lewis M. Norton (J. Log. Program., 1990)

Fast Fourier transform-based correlation of DNA sequences using complex plane encoding. - E. A. Cheever; G. Christian Overton; David B. Searls (Comput. Appl. Biosci., 1991)

Doing sequence analysis with your printer. - David B. Searls (Comput. Appl. Biosci., 1993)

The First International Conference on Intelligent Systems for Molecular Biology. - David B. Searls; Jude W. Shavlik; Lawrence Hunter (AI Mag., 1994)

SORTEZ: a relational translator for NCBI's ASN.1 database. - K. W. Hart; David B. Searls; G. Christian Overton (Comput. Appl. Biosci., 1994)

Automata-Theoretic Models of Mutation and Alignment. - David B. Searls; Kevin P. Murphy (ISMB, 1995)

String Variable Grammar: A Logic Grammar Formalism for the Biological Language of DNA. - David B. Searls (J. Log. Program., 1995)

Introduction. - Jude W. Shavlik; Lawrence Hunter; David B. Searls (Mach. Learn., 1995)

Languages, Automata, and Macromolecules. - David B. Searls (German Conference on Bioinformatics, 1997)

Linguistic approaches to biological sequences. - David B. Searls (Comput. Appl. Biosci., 1997)

Formal language theory and biological macromolecules. - David B. Searls (Mathematical Support for Molecular Biology, 1998)

Reading the book of life. - David B. Searls (Bioinform., 2001)

From Jabberwocky to Genome: Lewis Carroll and Computational Biology. - David B. Searls (J. Comput. Biol., 2001)

Grammatical Representations of Macromolecular Structure. - David Chiang 001; Aravind K. Joshi; David B. Searls (J. Comput. Biol., 2006)

A View from the Dark Side. - David B. Searls (PLoS Comput. Biol., 2007)

Literature mining in support of drug discovery. - Pankaj Agarwal; David B. Searls (Briefings Bioinform., 2008)

IUPHAR-DB: the IUPHAR database of G protein-coupled receptors and ion channels. - Anthony J. Harmar; Rebecca A. Hills; Edward M. Rosser; Martin Jones; Oscar Peter Buneman; Donald R. Dunbar; Stuart D. Greenhill; Valerie A. Hale; Joanna L. Sharman; Tom I. Bonner; William A. Catterall; Anthony P. Davenport; et al. (Nucleic Acids Res., 2009)

Ten Simple Rules for Choosing between Industry and Academia. - David B. Searls (PLoS Comput. Biol., 2009)

Molecules, Languages and Automata. - David B. Searls (ICGI, 2010)

The Roots of Bioinformatics. - David B. Searls (PLoS Comput. Biol., 2010)

Ten Simple Rules for Online Learning. - David B. Searls (PLoS Comput. Biol., 2012)

An Online Bioinformatics Curriculum. - David B. Searls (PLoS Comput. Biol., 2012)

A New Online Computational Biology Curriculum. - David B. Searls (PLoS Comput. Biol., 2014)