An Autonomous In Vivo Dual Selection Protocol for Boolean Genetic Circuits. - David Benes; Petr Sosík; Alfonso Rodríguez-Patón (Artif. Life, 2015)

Directed evolution of biocircuits using conjugative plasmids and CRISPR-Cas9: design and in silico experiments. - David Benes; Alfonso Rodríguez-Patón; Petr Sosík (Nat. Comput., 2017)

TCI: A system for distributed network monitoring, troubleshooting and dataset creation. - Dominik Soukup; Jaroslav Pesek; Lukás Hejcman; David Benes; Tomás Cejka (NOMS, 2024)